View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6594_low_96 (Length: 237)
Name: NF6594_low_96
Description: NF6594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6594_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 5050876 - 5050671
Alignment:
| Q |
20 |
ggattcatggtttcaattgttgtaaatgattttttgatattccattgtggcctattccaatccatccataacatagcataagatcgttatgtagaattgt |
119 |
Q |
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| T |
5050876 |
ggattcatggtttcaattgttgtaaatgattttttgatattccattgtggcctattccaatccatccataacatagcataacatccttatgtagaattgt |
5050777 |
T |
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| Q |
120 |
taacaaaatttgtgtgg---gtagcatattagcactggtataagtcccacatcggggagaatagctaaagctgtgtgggaaagtggttataaaatgaaag |
216 |
Q |
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| T |
5050776 |
taacaaaatttgtgtgggtagtagcatattagcactggtataagtcccacatcggggagaatagctgaagctgtgtgggaaagtggttataaaatgaaag |
5050677 |
T |
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| Q |
217 |
cctatg |
222 |
Q |
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|||||| |
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| T |
5050676 |
cctatg |
5050671 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 51274740 - 51274824
Alignment:
| Q |
20 |
ggattcatgg-tttcaattgttgtaaatgatttt--ttgatattccattgtggcctattccaa-tccatccataacatagcataa |
100 |
Q |
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| T |
51274740 |
ggattcatgggtttcaatcgttgcaaatgatttcacttgatcttccattgtggccaactccaattccatccataccatagcataa |
51274824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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