View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_high_1 (Length: 619)
Name: NF6595_high_1
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 26915272 - 26914651
Alignment:
| Q |
1 |
tgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattgctggattg |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26915272 |
tgatgatcataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctgatttcatgttttggattttttattgctggattg |
26915173 |
T |
|
| Q |
101 |
cccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgttttatgttc |
200 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26915172 |
cccaaaggtgcgatgttaagatgaaaacttgttcctgaagagtctaattacaacctagcttttgccgtttcttcgaatagttatattctgttttatgttc |
26915073 |
T |
|
| Q |
201 |
cattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattat---ctcgttttcttgatgtacctgactctgaatgtatatg |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26915072 |
cattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattattatctcgttttcttgatgtacctgactctgaatgtatatg |
26914973 |
T |
|
| Q |
298 |
aaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaagt |
397 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914972 |
gaatttaggctctccttgcaataatggatagtcctctttgcttgtctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaagt |
26914873 |
T |
|
| Q |
398 |
tgatccacaaggcaggataccaaaaacttttggaaagttttgtaatatgatgtgtaagtttctctattcatgaaatgtattatcccataatccattctca |
497 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914872 |
tgatccacaaggcaggataccagaaacttttggaaagttttgtaatatgatgtgtaagtttctctattcatgaaatgtattatcccataatccattctca |
26914773 |
T |
|
| Q |
498 |
ttcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaa |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914772 |
ttcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaa |
26914673 |
T |
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| Q |
598 |
tcaaagggcaatgagggaaggc |
619 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
26914672 |
tcaaagggcaatgagggaaggc |
26914651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 51182991 - 51182399
Alignment:
| Q |
1 |
tgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattgctggattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51182991 |
tgatgattataggccagatattgttcatcaggttagccactgttttcattactttgacaatgag--------atgttttggattttttattgctggattg |
51182900 |
T |
|
| Q |
101 |
cccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgttttatgttc |
200 |
Q |
| |
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||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||| |
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| T |
51182899 |
cccaaaggcgcgacgttgagatgaaaacttgttcttgaagagtctaattacaacctaacttc--------ctctgaatagttatattttgttttatgttc |
51182808 |
T |
|
| Q |
201 |
cattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattat---ctcgttttcttgatgtacctgactctgaatgtatatg |
297 |
Q |
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||||||||||||||||||||||| || | | | | ||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |
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| T |
51182807 |
cattgtagttttcttagaaaagtattatt--ataaaaccctgaaaagtttgaaagattattatctcattttcttgatgtacctaactctgaatgtatatg |
51182710 |
T |
|
| Q |
298 |
aaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaagt |
397 |
Q |
| |
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| |||||||||||||||||||| || ||||| | ||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
51182709 |
gattttaggctctccttgcaatattgagtagtgcactttgcttggctggtagagtaagcgctatattcatcagaaccggtgaaggaattcttattaaagt |
51182610 |
T |
|
| Q |
398 |
tgatccacaaggcaggataccaaaaacttttggaaagttttgtaatatgatgtg-----taagtttc---tctattcatgaaatgtattatcccataatc |
489 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||| || | ||||||||||||||| |
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| T |
51182609 |
tgatccacaaaccaggataccaaaaacttttggaaatttttgtaatatgatgggtaagctaagtttctcatcaactcatgaaatgtatta---------- |
51182520 |
T |
|
| Q |
490 |
cattctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatcca |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
51182519 |
-----tcattcttggctttgatcatcatattgacatctttgcttttc-cccacttcaaaatacttaataattattttagtggagttgctgcaaaaatcca |
51182426 |
T |
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