View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_high_15 (Length: 286)
Name: NF6595_high_15
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3690114 - 3689903
Alignment:
| Q |
1 |
tcatttaaactacacaatttttctaaatgtttgtaaggtctagtttaattggcaataccattattgttaagatgcacaccttcatccgagttcaaattta |
100 |
Q |
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| T |
3690114 |
tcatttaagctacacaatttttctaaatgtttgtaaggtttagtttaattggcaatgccattattgttaagatgcacaccttcatccgagttcaaactta |
3690015 |
T |
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| Q |
101 |
aaatctcgtaattgaatgtatttgtttcagataatgcttatcaatttatttagataccnnnnnnnncatatcatcaaattttatgtatctagaagagaat |
200 |
Q |
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| T |
3690014 |
aaatctcgtaattgaatgtgtttgtttcagataatgcttgttaattcatttagatacc-aaaaaaacaaatcattaaattttatgtatctagaagagaat |
3689916 |
T |
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| Q |
201 |
tcactatttgatt |
213 |
Q |
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| T |
3689915 |
tcactatttgatt |
3689903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 3689902 - 3689864
Alignment:
| Q |
232 |
gtcttgaatttctaaaacataagagttttataatatatt |
270 |
Q |
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| T |
3689902 |
gtcttgaatttctaaaacataagagttttataatatatt |
3689864 |
T |
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