View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_high_20 (Length: 235)
Name: NF6595_high_20
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 649233 - 649049
Alignment:
| Q |
17 |
atcaatacaacaaagcaaaccataattttaaaatttctgtttataagcatcacaaacagcaatgtgttactagaagtttagataaaggaaatacttccag |
116 |
Q |
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| T |
649233 |
atcaatacaacaaagcaaaccataattttaaaatttctgtttataagcatcacaaacagcaatgtgttactagaagtttagataaaggaaatacttccag |
649134 |
T |
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| Q |
117 |
tcaccaagatatgatttatgcaggtatgctcctctagcttaaaatgcttatcctatttgagcacgttacaacaaacgtgttcaac |
201 |
Q |
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| T |
649133 |
tcaccaagatatgatttatgcaggtatgctcttctagcttaaaatgcttatcctatttgagcacgttacaacaaacgtgttcaac |
649049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 238951 - 239089
Alignment:
| Q |
57 |
ttataagcatcacaaacagcaatgtgttactagaagtttagataaaggaaatacttccagtcaccaagatatgatttatgcaggtatgctcctctagctt |
156 |
Q |
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|||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
238951 |
ttataagcatcacacacaacaatgtgttactataagtttagataaaggaaatatttccagttaccaagatatgatttatgcagggatgctcttctagctt |
239050 |
T |
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| Q |
157 |
aaaatgcttatcctatttgagcacgttacaacaaacgtg |
195 |
Q |
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| T |
239051 |
aaattgcttatcctatttgagcatgttacaacaaacgtg |
239089 |
T |
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