View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6595_high_3 (Length: 574)
Name: NF6595_high_3
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 12 - 555
Target Start/End: Complemental strand, 11846861 - 11846318
Alignment:
| Q |
12 |
atgaactatacacataattagaatgcagaacataatttatttccaatttattatatcaaattaatgtttaccttagattgctttcatcattcatccttcc |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11846861 |
atgaactatacacataattagaatgcagaacataatttatttccaatttattatatcaaattaatgtttaccttagactgctttcatcattcatccttcc |
11846762 |
T |
|
| Q |
112 |
aagccaccataattaacctcgctacttatatagaaatttttaaaattaaatcatacagtgatatgagaaatggtattagattagtttgctagttaaaaag |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11846761 |
aagccaccataattaaccttgctacttatatagaaatttttaaaatcaaatcatacagtgatatgagaaatggtattagattagtttgctagttaaaaag |
11846662 |
T |
|
| Q |
212 |
aaccaaaaattgaaccgaactacgaaccaaactgaaccgaattaaaattaactgaaccatttaagtagcttgcgaactaaaccggtaatttaataacgat |
311 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
11846661 |
atccaaaaactgaaccgaactacgaaccaaactgaaccgaataataattaactgaaccatttaagtagcttgtgaaccaaaccggtaatttaataacgat |
11846562 |
T |
|
| Q |
312 |
tattgaaccataaccgatatgttttgaaccgaatcgaaccattttgaaccgaataaaaccattaacaaaacacaaacttcatattttaacaatgaagttt |
411 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
11846561 |
tattgaaccataactgatatgttttgaaccgaatcgaaccattttaaaccgaaccaaaccatcagcaaaacacaaacttcatattttaacaatgaagttt |
11846462 |
T |
|
| Q |
412 |
tattttccctttcatcatgcattatcattggaattgttgatgtttttgttgatattcctaaaatacaactagtaaaaccacaaaaatttaataaatagtg |
511 |
Q |
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|
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| T |
11846461 |
tattttccctttcatcatgcattatcattggaattgttgatgtttttgttgatattcctaaaatacaaatagtaaaaccacaaaaaattaataaatagtg |
11846362 |
T |
|
| Q |
512 |
tgatttaattcttaaaaaggattaatacatttggtcatagttta |
555 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11846361 |
tgatttaattcttaaaaaggattaatacatttggtcatagttta |
11846318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 383 - 555
Target Start/End: Complemental strand, 32051183 - 32051010
Alignment:
| Q |
383 |
acaaacttcatattttaacaatgaagttttattttccctttcatcatgcattatcattggaatt-gttgatgtttttgttgatattcctaaaatacaact |
481 |
Q |
| |
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|||||||||||||||||| |||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
32051183 |
acaaacttcatattttaataatggatttttattttccatttcatcatgcattatcattggaatttgttgatgtttttgttgatgttcctaaaatacaact |
32051084 |
T |
|
| Q |
482 |
agtaaaaccacaaaaatttaataaatagtgtgatttaattcttaaaaaggattaatacatttggtcatagttta |
555 |
Q |
| |
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| ||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
32051083 |
aataaaaccacaataaattaataactagtgtgatttaattcttaaaaaggcttaatacattaggtcatagttta |
32051010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 554
Target Start/End: Original strand, 25970002 - 25970167
Alignment:
| Q |
383 |
acaaacttcatattttaacaatgaagttttattttccctttcatcatgcattatcattggaattgttgatgtttttgttgatattcctaaaatacaac-- |
480 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| |||| |||| | ||||||| |||||||||| | | |
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| T |
25970002 |
acaaacttcatattttaataataaagttttattttctctttcatcatacattattattgaaatt--------tgttgttgaaattcctaaaacgctagat |
25970093 |
T |
|
| Q |
481 |
tagtaaaaccacaaaaatttaataaatagtgtgatttaattcttaaaaaggattaatacatttggtcatagttt |
554 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||||| ||||||||| ||||| ||||||| |||||||| |
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| T |
25970094 |
tagtaaaaccacaaaaaattaataattgatgtgatttaatttttaaaaaggtttaatgcatttggccatagttt |
25970167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 245 - 555
Target Start/End: Complemental strand, 39916224 - 39915923
Alignment:
| Q |
245 |
gaaccgaattaaaattaactgaaccatttaagtagcttgcgaactaaaccggtaatttaataacgattattgaaccataaccgatatgttttgaaccgaa |
344 |
Q |
| |
|
|||||||| | |||||||| |||||||| |||| | |||||||| |||| |||||||||||| | ||||||||||||||| || |||||||||||| |
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|
| T |
39916224 |
gaaccgaactgaaattaaccgaaccattaaagtggtttgcgaaccgaaccagtaatttaataatggttattgaaccataactgaaccattttgaaccgaa |
39916125 |
T |
|
| Q |
345 |
tcgaaccattttgaaccgaataaaaccattaacaaaacacaaacttcatattttaacaatgaagttttattttccctttcatcatgcattatcattggaa |
444 |
Q |
| |
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| ||||||| ||||||||| ||| ||||||||| || ||||| |||||| |||||||||||||||||||||||||| | ||||||| |
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|
| T |
39916124 |
a----------taaaccgaaccaaaccattagaaaagaacaaacttcgtagtttaataatgaaattttattttccctttcatcatgcattgtaattggaa |
39916035 |
T |
|
| Q |
445 |
ttg-ttgatgtttttgttgatattcctaaaatacaactagtaaaaccacaaaaatttaataaatagtgtgatttaattcttaaaaaggattaatacattt |
543 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||||||| ||||| ||||| |
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|
| T |
39916034 |
tttattaatgtttttgttgatattcctaaaatacaactagtaaaaccacaagaaattaataaccggtgtgatttaatttttaaaaaggcttaatgcattt |
39915935 |
T |
|
| Q |
544 |
ggtcatagttta |
555 |
Q |
| |
|
|||||||||||| |
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|
| T |
39915934 |
ggtcatagttta |
39915923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 234 - 493
Target Start/End: Complemental strand, 45618885 - 45618622
Alignment:
| Q |
234 |
cgaaccaaactgaaccgaattaaaattaactgaaccatttaagtagcttgcgaactaaaccggtaatttaataacgattattgaaccataaccgatatgt |
333 |
Q |
| |
|
|||||||||||||| | |||| |||||||| ||||||||||||| | | |||| | || ||||||||||| ||||||| || |||| ||| ||| |
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|
| T |
45618885 |
cgaaccaaactgaatcaaattgaaattaaccgaaccatttaagtggttgaagaacctagccaacaatttaataacaattattggacaataatcgaactgt |
45618786 |
T |
|
| Q |
334 |
tttgaaccgaatcgaaccattttgaaccgaataaaaccattaacaaaacacaaacttcatattttaacaatgaagttttattttccctttcatca---tg |
430 |
Q |
| |
|
|||||||| || || |||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
45618785 |
tttgaaccaaactgatatgttttgagccgaaccaaaccattagcaaaacacaaacttcatattttaataatgaagttttattttccctttcatcatcgtg |
45618686 |
T |
|
| Q |
431 |
cattatcattggaa-ttgttgatgtttttgttgatattcctaaaatacaactagtaaaaccaca |
493 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45618685 |
cattatcattggaatttattgatgtttttgttgatattcctaaaatacaactagtaaaaccaca |
45618622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 9224777 - 9224862
Alignment:
| Q |
239 |
caaactgaaccgaattaaaattaactgaaccatttaagtagcttgcgaactaaaccggtaatttaataacgattattgaaccataa |
324 |
Q |
| |
|
||||| |||| ||||| |||||||| ||| |||||| | | ||| |||||||||| ||||||||||||| ||| |||||||||| |
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|
| T |
9224777 |
caaaccgaactgaattgaaattaacaaaactatttaattggtttgtgaactaaaccaataatttaataacggttaatgaaccataa |
9224862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 297 - 555
Target Start/End: Original strand, 35152307 - 35152554
Alignment:
| Q |
297 |
taatttaataacgattattgaaccataaccgatatgttttgaaccgaatcgaaccattttgaaccgaataaaaccattaacaaaa-cacaaacttcatat |
395 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||| |||||||| |||| ||| |||||||| |||||||| ||||| |||| |||| | || |
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|
| T |
35152307 |
taatttaataacagttattgaaccataatcgaactgttt-gaaccgaactgaactgtttggaaccgaactcaaccattaccaaaagcacacactttacat |
35152405 |
T |
|
| Q |
396 |
tttaacaatgaagttttattttccctttcatcatgcattatcattggaattgttgatgtttttgttgatattcctaaaatacaactagtaaaaccacaaa |
495 |
Q |
| |
|
| ||| ||| || ||||||||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||||||| |
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|
| T |
35152406 |
tctaataataaaattttattttgcctttcatcatgcattaacattgaaatt-----------tgttgatattagtaaaatacaactattaaaaccacaaa |
35152494 |
T |
|
| Q |
496 |
aatttaataaatagtgtgatttaattcttaaaaaggattaatacatttggtcatagttta |
555 |
Q |
| |
|
|| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35152495 |
aaattaataactagtgttatttaattcttaaaaaggcttaatacatttggtcatagttta |
35152554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 402 - 553
Target Start/End: Complemental strand, 37199109 - 37198957
Alignment:
| Q |
402 |
aatgaagttttattttccctttcatcatgcattatcattggaatt-gttgatgtttttgttgatattcctaaaatacaactagtaaaaccacaaaaattt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||| |||| ||||||||||||||||||| | || |||||||||||||| || |
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|
| T |
37199109 |
aatgaagttttattttccctttcatcatgcattatcatcagaaatcgttggtgttgttgttgatattcctaaaatgcgacacttaaaaccacaaaaaatt |
37199010 |
T |
|
| Q |
501 |
aataaatagtgtgatttaattcttaaaaaggattaatacatttggtcatagtt |
553 |
Q |
| |
|
||| | |||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
37199009 |
aatgacgagtgtgatttaattcttaaaaaagcttaatacatttggtcatagtt |
37198957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 368 - 506
Target Start/End: Original strand, 15855439 - 15855578
Alignment:
| Q |
368 |
aaccattaacaaaacacaaacttcatattttaacaatgaagttttattttccctttcatcatgcattatcattggaa-ttgttgatgtttttgttgatat |
466 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||| | ||||| ||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
15855439 |
aaccattagcaaagcacaaacttaatattttaatagtgaagatttattttctcttttatcatgcattatcattgaaagttgttgatgtttttgttgatat |
15855538 |
T |
|
| Q |
467 |
tcctaaaatacaactagtaaaaccacaaaaatttaataaa |
506 |
Q |
| |
|
||||| ||||||||| |||||| ||||| || |||||||| |
|
|
| T |
15855539 |
tcctataatacaacttgtaaaatcacaagaaattaataaa |
15855578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 26551548 - 26551606
Alignment:
| Q |
410 |
tttattttccctttcatcatgcattatcattggaa-ttgttgatgtttttgttgatatt |
467 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||||||||| || |||||||| |
|
|
| T |
26551548 |
tttattttccctttcatcatgcactatcattgaaatttgttgatgttgtttttgatatt |
26551606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 49344830 - 49344776
Alignment:
| Q |
63 |
tatatcaaattaatgtttaccttagattgctttcatcattcatccttccaagccac |
118 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
49344830 |
tatatcaaattaatgttaaccttagattactttc-tcattcatctttccaagccac |
49344776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 49354776 - 49354703
Alignment:
| Q |
45 |
aatttatttccaattt-attatatcaaattaatgtttaccttagattgctttcatcattcatccttccaagccac |
118 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||| |
|
|
| T |
49354776 |
aatttattttcaatttgaatatatcaaattaatgttaaccttagattactttc-tcattcatcttttcaagccac |
49354703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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