View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_high_4 (Length: 563)
Name: NF6595_high_4
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 158 - 547
Target Start/End: Original strand, 33035564 - 33035953
Alignment:
| Q |
158 |
gatatgcaaaagtataagattcaatcgtgagagtttgaagagcgaaccagatatttccttaccacgtcctctgccactaaagccaccaaaaaggatagac |
257 |
Q |
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| T |
33035564 |
gatatgcaaaagtataagattcaatcgtgagagtttgaagagcgaaccagatatttccttaccacgtcctctaccgctaaagccaccaaaaaggatagac |
33035663 |
T |
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| Q |
258 |
atgtccttagaaacctccaaaacaaccaaatccagcagttcatggccgctcactagaaaaatctacataaagggttgcgcggaggacctctgtcacaaca |
357 |
Q |
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| T |
33035664 |
atgtccttagaaacctccaaaacaaccaaatccaacggttcatggccgctcactagaaaaatctacataaagggtggtgcggaggacccttgtcacaaca |
33035763 |
T |
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| Q |
358 |
atgcttagatggtttatgaaatctatatatgtgagtgtccgctagaatgcgtactgaatttaacctggaaaatatgaattggttggtttcaggtttaaga |
457 |
Q |
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| T |
33035764 |
atacttagatggtttatgaaatctatatatgtgagtgtccgctagaatccgtactgaatttaacctggaaaatatgaattggttggtttcaggtttaaga |
33035863 |
T |
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| Q |
458 |
ctatgttttctcctatttcaaaagacgagggtagagcggaaaatgaagacattaatattaacctcaaacttttctcaaactcgtccgctt |
547 |
Q |
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| T |
33035864 |
ctatgttttctctgatttctaaagacgagggtagagcggaaaatgaagacattaatattaacctcaaacttttctcgaactcgtccgctt |
33035953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 33035416 - 33035503
Alignment:
| Q |
9 |
gacatcatcagaaaaagaacactaatgagccgaatgaaagcagcctcgaggggtttagagcccaactacatttaccgtgttgtgacgg |
96 |
Q |
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| T |
33035416 |
gacatcatcagaaaaggaacactaatgagccgaatgaaagcagcctcgaggggtttagagcccaactagattcaccgtgttgtgacgg |
33035503 |
T |
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