View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6595_high_5 (Length: 488)

Name: NF6595_high_5
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6595_high_5
NF6595_high_5
[»] chr3 (24 HSPs)
chr3 (191-471)||(2928763-2929043)
chr3 (319-470)||(19826728-19826879)
chr3 (308-467)||(51661285-51661443)
chr3 (12-96)||(2928580-2928664)
chr3 (342-470)||(5813819-5813947)
chr3 (385-471)||(16416247-16416333)
chr3 (385-471)||(18517220-18517306)
chr3 (13-96)||(25760008-25760091)
chr3 (13-96)||(18517666-18517749)
chr3 (13-90)||(16037951-16038028)
chr3 (13-89)||(16041497-16041573)
chr3 (13-89)||(16053448-16053524)
chr3 (13-73)||(47165893-47165953)
chr3 (13-96)||(51661668-51661751)
chr3 (13-73)||(11072491-11072551)
chr3 (13-96)||(26430245-26430328)
chr3 (13-70)||(3736495-3736552)
chr3 (13-86)||(5813566-5813639)
chr3 (17-86)||(19826423-19826492)
chr3 (197-281)||(51661482-51661564)
chr3 (13-73)||(3580434-3580494)
chr3 (13-73)||(20970215-20970275)
chr3 (26-72)||(14674198-14674244)
chr3 (204-248)||(26430095-26430139)
[»] chr2 (25 HSPs)
chr2 (192-471)||(17377738-17378011)
chr2 (346-470)||(29216067-29216191)
chr2 (308-470)||(22170363-22170522)
chr2 (378-470)||(20631689-20631781)
chr2 (376-467)||(9892488-9892579)
chr2 (13-96)||(17377513-17377596)
chr2 (13-89)||(20477420-20477496)
chr2 (17-89)||(36802276-36802348)
chr2 (13-73)||(17678296-17678356)
chr2 (13-73)||(17679721-17679781)
chr2 (13-73)||(22169973-22170033)
chr2 (30-96)||(24270841-24270907)
chr2 (24-90)||(40926479-40926545)
chr2 (13-69)||(20632479-20632535)
chr2 (13-88)||(12102805-12102880)
chr2 (26-73)||(38242155-38242202)
chr2 (30-88)||(17151291-17151349)
chr2 (26-72)||(18505718-18505764)
chr2 (336-406)||(20388585-20388655)
chr2 (30-96)||(24297329-24297395)
chr2 (28-70)||(25971019-25971061)
chr2 (13-87)||(34454887-34454961)
chr2 (28-73)||(24524098-24524143)
chr2 (28-73)||(26916639-26916684)
chr2 (13-73)||(38376871-38376931)
[»] chr6 (33 HSPs)
chr6 (202-470)||(3056550-3056812)
chr6 (308-471)||(14373884-14374046)
chr6 (13-89)||(14372193-14372269)
chr6 (321-396)||(24353508-24353583)
chr6 (378-470)||(15130163-15130255)
chr6 (376-471)||(9351491-9351586)
chr6 (13-96)||(20898950-20899033)
chr6 (23-96)||(9351141-9351214)
chr6 (13-73)||(8462018-8462078)
chr6 (26-86)||(26522723-26522783)
chr6 (13-73)||(34338101-34338161)
chr6 (13-96)||(3056926-3057008)
chr6 (344-451)||(3547060-3547167)
chr6 (319-406)||(9697174-9697261)
chr6 (26-72)||(19324755-19324801)
chr6 (13-73)||(10192863-10192923)
chr6 (13-73)||(12435965-12436025)
chr6 (197-292)||(14373764-14373857)
chr6 (197-253)||(24353383-24353439)
chr6 (26-73)||(9696878-9696925)
chr6 (13-72)||(10138883-10138942)
chr6 (13-72)||(13575013-13575072)
chr6 (13-72)||(13577552-13577611)
chr6 (26-73)||(18306748-18306794)
chr6 (24-93)||(9344469-9344538)
chr6 (319-396)||(18307042-18307119)
chr6 (28-73)||(27962065-27962110)
chr6 (13-73)||(3546655-3546715)
chr6 (24-96)||(8212273-8212345)
chr6 (13-73)||(13664171-13664231)
chr6 (13-73)||(14641447-14641507)
chr6 (16-88)||(14982386-14982458)
chr6 (13-73)||(24127831-24127891)
[»] chr8 (30 HSPs)
chr8 (308-471)||(29820705-29820868)
chr8 (308-471)||(17274310-17274472)
chr8 (319-470)||(6001037-6001188)
chr8 (342-470)||(45269091-45269219)
chr8 (319-466)||(23594939-23595084)
chr8 (319-466)||(23603861-23604006)
chr8 (329-470)||(21592734-21592874)
chr8 (342-470)||(10568600-10568728)
chr8 (13-96)||(16290844-16290927)
chr8 (13-96)||(29840849-29840932)
chr8 (13-96)||(41600712-41600795)
chr8 (378-470)||(14412908-14413000)
chr8 (13-89)||(17274705-17274781)
chr8 (13-73)||(21593194-21593254)
chr8 (13-73)||(23595388-23595448)
chr8 (13-73)||(23604310-23604370)
chr8 (13-88)||(10568307-10568382)
chr8 (197-292)||(17274500-17274593)
chr8 (336-392)||(19495299-19495355)
chr8 (26-73)||(16889985-16890032)
chr8 (13-88)||(17802740-17802815)
chr8 (217-255)||(6001249-6001287)
chr8 (28-70)||(11837153-11837195)
chr8 (28-70)||(23124009-23124051)
chr8 (15-89)||(26867453-26867527)
chr8 (13-70)||(14413351-14413408)
chr8 (204-253)||(17960110-17960159)
chr8 (13-86)||(45268842-45268915)
chr8 (13-73)||(24184758-24184818)
chr8 (13-89)||(26657662-26657738)
[»] scaffold0012 (3 HSPs)
scaffold0012 (308-471)||(103345-103507)
scaffold0012 (13-89)||(103701-103777)
scaffold0012 (13-73)||(55783-55843)
[»] chr7 (24 HSPs)
chr7 (308-471)||(24573986-24574148)
chr7 (193-280)||(9411416-9411503)
chr7 (377-470)||(9411509-9411602)
chr7 (314-464)||(28779869-28780017)
chr7 (342-470)||(14073483-14073611)
chr7 (342-470)||(14383511-14383639)
chr7 (197-292)||(24573865-24573958)
chr7 (13-73)||(12727812-12727872)
chr7 (14-73)||(1748315-1748374)
chr7 (17-86)||(11295381-11295450)
chr7 (379-430)||(3728093-3728144)
chr7 (26-73)||(18270316-18270363)
chr7 (197-255)||(11295564-11295622)
chr7 (319-377)||(11295687-11295745)
chr7 (7-73)||(14073800-14073866)
chr7 (7-73)||(14383828-14383894)
chr7 (13-50)||(28780215-28780252)
chr7 (9-72)||(10608315-10608378)
chr7 (26-73)||(22849544-22849591)
chr7 (14-89)||(24573678-24573753)
chr7 (26-84)||(3410360-3410418)
chr7 (28-70)||(20936834-20936876)
chr7 (13-50)||(12163429-12163466)
chr7 (13-73)||(3399558-3399618)
[»] chr1 (23 HSPs)
chr1 (308-470)||(27036253-27036414)
chr1 (376-471)||(908009-908104)
chr1 (13-73)||(27035859-27035919)
chr1 (13-89)||(34517674-34517750)
chr1 (376-471)||(10424166-10424261)
chr1 (13-71)||(13309386-13309444)
chr1 (13-73)||(10423808-10423868)
chr1 (13-95)||(34528926-34529008)
chr1 (378-471)||(1624414-1624507)
chr1 (13-50)||(35877008-35877045)
chr1 (13-89)||(907666-907742)
chr1 (13-73)||(21813174-21813234)
chr1 (362-437)||(13309638-13309713)
chr1 (26-72)||(21464782-21464828)
chr1 (336-392)||(41357428-41357484)
chr1 (13-72)||(24885088-24885147)
chr1 (344-406)||(21460567-21460629)
chr1 (28-70)||(22522820-22522862)
chr1 (26-79)||(29302952-29303005)
chr1 (24-96)||(12629267-12629339)
chr1 (13-73)||(16280442-16280502)
chr1 (5-72)||(19054383-19054451)
chr1 (29-73)||(31893125-31893169)
[»] chr5 (21 HSPs)
chr5 (335-470)||(5781429-5781564)
chr5 (13-72)||(39324353-39324412)
chr5 (13-73)||(28682764-28682824)
chr5 (26-73)||(11725659-11725706)
chr5 (319-406)||(35341439-35341526)
chr5 (17-73)||(5781091-5781147)
chr5 (13-73)||(21877908-21877968)
chr5 (13-96)||(10720869-10720952)
chr5 (17-86)||(19068705-19068774)
chr5 (13-73)||(2259404-2259464)
chr5 (13-64)||(5784492-5784543)
chr5 (378-445)||(11725267-11725334)
chr5 (329-392)||(29998821-29998883)
chr5 (26-73)||(34995469-34995516)
chr5 (22-88)||(6129711-6129777)
chr5 (13-73)||(15614748-15614808)
chr5 (13-73)||(21711545-21711605)
chr5 (13-73)||(29998578-29998638)
chr5 (13-73)||(31329284-31329344)
chr5 (13-73)||(35341900-35341959)
chr5 (378-406)||(39324699-39324727)
[»] chr4 (24 HSPs)
chr4 (377-470)||(8667397-8667490)
chr4 (191-286)||(8667303-8667397)
chr4 (342-470)||(39407075-39407203)
chr4 (319-470)||(10691822-10691973)
chr4 (319-470)||(10905588-10905739)
chr4 (381-471)||(3007605-3007695)
chr4 (353-471)||(33040938-33041056)
chr4 (13-96)||(8667105-8667187)
chr4 (314-414)||(44673996-44674092)
chr4 (14-96)||(33040582-33040664)
chr4 (13-86)||(39406824-39406897)
chr4 (13-73)||(1924661-1924721)
chr4 (13-73)||(7190085-7190145)
chr4 (13-73)||(19904620-19904680)
chr4 (13-89)||(44673682-44673758)
chr4 (197-292)||(44673869-44673962)
chr4 (28-73)||(11485219-11485264)
chr4 (13-89)||(34512055-34512131)
chr4 (26-73)||(18234253-18234300)
chr4 (26-72)||(18025424-18025470)
chr4 (197-292)||(33040775-33040876)
chr4 (26-90)||(6192579-6192643)
chr4 (346-406)||(18233927-18233987)
chr4 (13-73)||(20380221-20380281)
[»] scaffold0607 (3 HSPs)
scaffold0607 (344-455)||(566-677)
scaffold0607 (342-464)||(6500-6622)
scaffold0607 (13-86)||(314-387)
[»] scaffold0015 (1 HSPs)
scaffold0015 (314-470)||(2345-2501)
[»] scaffold0281 (1 HSPs)
scaffold0281 (308-406)||(6839-6937)
[»] scaffold0437 (3 HSPs)
scaffold0437 (329-470)||(14582-14722)
scaffold0437 (13-73)||(14337-14397)
scaffold0437 (13-73)||(11425-11485)
[»] scaffold0216 (1 HSPs)
scaffold0216 (302-406)||(15666-15770)
[»] scaffold0009 (1 HSPs)
scaffold0009 (13-96)||(1501-1584)
[»] scaffold0291 (1 HSPs)
scaffold0291 (13-73)||(21881-21941)
[»] scaffold0063 (1 HSPs)
scaffold0063 (376-470)||(63188-63282)
[»] scaffold0363 (2 HSPs)
scaffold0363 (378-470)||(5711-5803)
scaffold0363 (13-70)||(5303-5360)
[»] scaffold0886 (1 HSPs)
scaffold0886 (13-73)||(2793-2853)
[»] scaffold0265 (1 HSPs)
scaffold0265 (13-73)||(19575-19635)
[»] scaffold0093 (1 HSPs)
scaffold0093 (13-73)||(16035-16095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (13-73)||(129432-129492)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-73)||(307249-307309)
[»] scaffold0292 (1 HSPs)
scaffold0292 (13-64)||(21240-21291)
[»] scaffold0020 (1 HSPs)
scaffold0020 (13-72)||(123852-123911)
[»] scaffold0125 (2 HSPs)
scaffold0125 (26-72)||(35530-35576)
scaffold0125 (336-406)||(39293-39363)
[»] scaffold0238 (1 HSPs)
scaffold0238 (13-73)||(4450-4510)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-89)||(36679-36755)
[»] scaffold0001 (1 HSPs)
scaffold0001 (26-70)||(20692-20736)
[»] scaffold0007 (1 HSPs)
scaffold0007 (26-73)||(173879-173926)
[»] scaffold0553 (1 HSPs)
scaffold0553 (26-72)||(7519-7565)
[»] scaffold0196 (1 HSPs)
scaffold0196 (13-50)||(798-835)
[»] scaffold0134 (1 HSPs)
scaffold0134 (28-73)||(2492-2537)
[»] scaffold0068 (1 HSPs)
scaffold0068 (13-73)||(2305-2365)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 191 - 471
Target Start/End: Original strand, 2928763 - 2929043
Alignment:
Q  191 ccctacaacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgc 290  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||    
T  2928763 ccctacaacatattatgaaaatctaaagttgggtaaaccacaactatccctaaagaaaacaaccccatcagggagagaagacaatcaaaccattccttgc 2928862  T
Q  291 acatcacagtagcaagcaaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattcca 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2928863 acatcacagtagcaagcaaaattagaacaagtttatgagacatgtataaattctttaaagcaatccgagtatcagaattatcgatacctctaacattcca 2928962  T
Q  391 atagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2928963 atagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 2929043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 319 - 470
Target Start/End: Original strand, 19826728 - 19826879
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtat 418  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||| | |||||| |     
T  19826728 aggtttatgagacaaatataaattctttaaagcaatccgagtatcagaattaatgatacctctaacaatccaatagagaaaattcattgatcagtcgaac 19826827  T
Q  419 gattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||   |||||||||||||| ||||||| ||||||||| | ||||||||||||    
T  19826828 gaggatcaccccgagcacgggttttagtaggctgctttggcaagacttgttg 19826879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 308 - 467
Target Start/End: Complemental strand, 51661443 - 51661285
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    ||||| |||||| | || |||||||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||     
T  51661443 aaaatcagaacatgcttttgagacatatataaatt-tttaaagcaatccgagtatcataattaccgatacctctaacattccaatggagcaaattcattg 51661345  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttg 467  Q
    |||||||   ||||| |||||||| ||||| |||||||| ||||||||||||||||||||    
T  51661344 agcagtctggtgattatcaccccgggcacgggttttagggggctgcttagccaagacttg 51661285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 2928580 - 2928664
Alignment:
Q  12 tcatcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  2928580 tcatcaagaagcaacatcgacattccaactaggttggcaattcgagagacctccatcttatgctgctaaactctaaaatattatt 2928664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 470
Target Start/End: Original strand, 5813819 - 5813947
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||  |||||| | ||||||  ||||||||| ||| |||    
T  5813819 tctttaaagcaatccaagtatcagaattactgatacctctaacattccaatagagaaaattcatggagcagttggatgattaccaccccgagaacgggtt 5813918  T
Q  442 ttaggaggctgcttagccaagacttgttg 470  Q
    |||| ||||| ||| || ||||| |||||    
T  5813919 ttagtaggcttctttgctaagacatgttg 5813947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 16416333 - 16416247
Alignment:
Q  385 attccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    ||||||||||||||||||||||  |||||   |||||| |||||||||||||| |||||||||||||| || |||||||||||||||    
T  16416333 attccaatagaggaaattcattgtgcagtttcatgattatcaccccgagcacgggttttaggaggctgttttgccaagacttgttgc 16416247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 18517306 - 18517220
Alignment:
Q  385 attccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    ||||||||||||||||||||||  |||||   |||||| |||||||||||||| |||||||||||||| || |||||||||||||||    
T  18517306 attccaatagaggaaattcattgtgcagtttcatgattatcaccccgagcacgggttttaggaggctgttttgccaagacttgttgc 18517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 25760091 - 25760008
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||| |||||||||||||||||||||| | ||  | |||||||||||||| ||| ||||||||||||||||||    
T  25760091 catcaagaggcaacaccgacatcccaactaggttggcacttcggaaaacctccatcctatgctgccaaactctaaaatattatt 25760008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 18517749 - 18517666
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||||||||||||||||||||||||||  |||||| | ||||||||||||  |  |||||||||||| |||||    
T  18517749 catcaagaggcaacatcgacatcccaactaggttggcatcccgagatagctccatcctatgccgtcaaactctaaaattttatt 18517666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 16038028 - 16037951
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaat 90  Q
    |||||||| ||| |||||||||| |||||||||||| |  |||||||||||||||||||||  || ||||||||||||    
T  16038028 catcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcctatgccgccaaactctaaaat 16037951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 16041573 - 16041497
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| ||| |||||||||| |||||||||||| |  |||||||||||||||||||||  || |||||||||||    
T  16041573 catcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcctatgccgccaaactctaaaa 16041497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 16053524 - 16053448
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| ||| |||||||||| ||||||||||| ||  |||||| |||||||||||||| ||| |||||||||||    
T  16053524 catcaagaggcatcatcgacatctcaactaggttgacatcccgagaaacctccatcctatgctgccaaactctaaaa 16053448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 47165893 - 47165953
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||| ||||||||||||    
T  47165893 catcaagaggcatcatcgacatcccaactaggttggcaccccgagagaactccatcctatg 47165953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 51661751 - 51661668
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||   ||||||||||||  |  |||||||||||| |||||    
T  51661751 catcaagaggcaacatcgacatcccaactaggttggcaccccgagaactctccatcctatgccgtcaaactctaaaattttatt 51661668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 11072551 - 11072491
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||| || |||||||||||||  |||||||||||||||||||||    
T  11072551 catcaagaggcatcatcgacagcctaactaggttggcatcccgagagacctccatcctatg 11072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 26430328 - 26430245
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| ||| ||||||||||| |||||||||||||  |||  | ||||||||||||||  || ||||||||||| ||||||    
T  26430328 catcaagaggcatcatcgacatcctaactaggttggcaccccgtaatacctccatcctatgccgccaaactctaaaaaattatt 26430245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 3736552 - 3736495
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||  ||| |||||||||||||||||||||||||  |||||| |||||||||||    
T  3736552 catcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcct 3736495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 5813566 - 5813639
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||||||| ||||||||||| | |||||||||||||||  |||||| |||| ||||||||| ||  ||||||||    
T  5813566 catcaagaggcaacatcgacttaccaactaggttggcatcccgagaaaccttcatcctatgctgtcaaactcta 5813639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 19826423 - 19826492
Alignment:
Q  17 aagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||| |||||||||||||||||||||||||||||  || ||| |||||| |||||||  || ||||||||    
T  19826423 aagaggcaacatcgacatcccaactaggttggcaccccaagaaacctccgtcctatgccgccaaactcta 19826492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 51661564 - 51661482
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaacc 281  Q
    |||| |||||||||||||  | |||| ||||||||| ||||||||||||||| ||  |||| ||||||||||||| || ||||||    
T  51661564 aacaaattatggaaatctgtaattggataaaccacatctatccctaaagaaatca--ctcattagggagagaagataatcaaacc 51661482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3580434 - 3580494
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||| ||||||||||||||||||   ||||||| ||||||||||||    
T  3580434 catcaagaggcatcatcgaaatcccaactaggttggcacctcgagagaactccatcctatg 3580494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 20970215 - 20970275
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| ||||||||| ||||||||||||||   | |||||||||||||||||||    
T  20970215 catcaagaggcatcatcgacattccaactaggttggcgccctgagagacctccatcctatg 20970275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 14674198 - 14674244
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||||||||||||||||  |||| | |||||||||||||    
T  14674198 catcgacatcccaactaggttggcaccccgaaatacctccatcctat 14674244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 26430139 - 26430095
Alignment:
Q  204 tatggaaatctaaagttgggtaaaccacaactatccctaaagaaa 248  Q
    |||||||||||| | |||||||||||||| || ||||||||||||    
T  26430139 tatggaaatctataattgggtaaaccacatctgtccctaaagaaa 26430095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 192 - 471
Target Start/End: Original strand, 17377738 - 17378011
Alignment:
Q  192 cctacaacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgca 291  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||    
T  17377738 cctacaacagattatggaaatctgaagttgggtaaaccacaactatccctaaagaaaacaacctcattggggagagaagacaaccaaatcgttccttgca 17377837  T
Q  292 catcacagtagcaagcaaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaa 391  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||      || |||||||||||||||||||    
T  17377838 catcacagtagcaagcaaaattagaacaagtttatgagacatgtataaattctttaaagcaatccgagtatc------accgatacctctaacattccaa 17377931  T
Q  392 tagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||    
T  17377932 tagaggaaattcattgagcagtcgtatgattgtcaccccgagcacgggttttgggaggctgctttgccaagacttgttgc 17378011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 346 - 470
Target Start/End: Complemental strand, 29216191 - 29216067
Alignment:
Q  346 taaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttag 445  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||||| || |||||| | |||||| ||||||||||||| | ||||| | |||||    
T  29216191 taaagcaatccgagtatcagagttactgatacctctaacattctaatagagaaatttcattgatcagtcgaatgattgtcacccagggcacgggatttag 29216092  T
Q  446 gaggctgcttagccaagacttgttg 470  Q
     ||||||||| || |||||||||||    
T  29216091 taggctgctttgctaagacttgttg 29216067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 470
Target Start/End: Original strand, 22170363 - 22170522
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    |||||||||| |||||| |||  ||| |||||||| ||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||| |     
T  22170363 aaaattagaataggtttgtga--catatataaatt-tttaaagcaatccaagtatcaaagttactgatacctctaacattccaatagaggaaattcactg 22170459  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    | || ||| ||||||||||||    ||||| | ||||  ||||||||| || |||||||||||    
T  22170460 atcactcgaatgattgtcaccaaaggcacgagatttattaggctgctttgctaagacttgttg 22170522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 470
Target Start/End: Complemental strand, 20631781 - 20631689
Alignment:
Q  378 ctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||||||||||||||||||||||||||||| | || ||| ||||||||||||||| | ||| | ||||  ||||||||| || |||||||||||    
T  20631781 ctctaacattccaatagaggaaattcattgatcactcgaatgattgtcaccccgggtacgggatttattaggctgctttgctaagacttgttg 20631689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 467
Target Start/End: Original strand, 9892488 - 9892579
Alignment:
Q  376 acctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttg 467  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |  |||| | ||||  ||||||||| || ||||||||    
T  9892488 acctctaacattccaatagaggaaattcattgatcagtcgaatgattgtcaccctggacacgggatttaataggctgctttgctaagacttg 9892579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 17377513 - 17377596
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||| ||| ||| ||||||||||||||  || ||| ||||||||||||||| || ||||||||||||||||||    
T  17377513 catcaagaggcaacaacgatatctcaactaggttggcaccccaagaaacctccatcctatgacgccaaactctaaaatattatt 17377596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 20477496 - 20477420
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||| ||||||||||||||  |  |||||||||||    
T  20477496 catcaagaggcatcatcgacatcccaactaggttggcaccccgagatacctccatcctatgccgtcaaactctaaaa 20477420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 36802276 - 36802348
Alignment:
Q  17 aagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||| |||||||||||||| ||||||||||||||  |||||| ||||||||||||||  || |||||||||||    
T  36802276 aagaggcaacatcgacatctcaactaggttggcaccccgagaaacctccatcctatgccgccaaactctaaaa 36802348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 17678296 - 17678356
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||| ||||||||||   ||||||||||||||||||||    
T  17678296 catcaagaggcatcatcgacatcccaattaggttggcacctcgagagacctccatcctatg 17678356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 17679721 - 17679781
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  17679721 catcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 17679781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 22169973 - 22170033
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||| ||||||||| ||||||||||  |||||||||||||||||||||    
T  22169973 catcaagaggcatcatcaacatcccaattaggttggcatcccgagagacctccatcctatg 22170033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 24270841 - 24270907
Alignment:
Q  30 gacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    ||||||||||||||||||||| | || || |||||||||||||| ||  |||||||||||| |||||    
T  24270841 gacatcccaactaggttggcactgcgggaaacctccatcctatgctgtcaaactctaaaattttatt 24270907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 40926479 - 40926545
Alignment:
Q  24 aacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaat 90  Q
    |||||||||||||||||||||||||||  ||| || ||||||||||||||  || ||||| ||||||    
T  40926479 aacatcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgccaaactataaaat 40926545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 20632535 - 20632479
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcc 69  Q
    |||||||  ||| |||||||||||||||||||||||||  |||||| ||||||||||    
T  20632535 catcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcc 20632479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 12102880 - 12102805
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaa 88  Q
    |||||||| ||||||||||||||||||||| ||||| |  |||||| | || |||||||||  || ||||||||||    
T  12102880 catcaagaggcaacatcgacatcccaactatgttggtatcccgagaaatcttcatcctatgccgccaaactctaaa 12102805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 38242155 - 38242202
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||||  |||||| |||| |||||||||    
T  38242155 catcgacatcccaactaggttggcaccccgagacaccttcatcctatg 38242202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 17151349 - 17151291
Alignment:
Q  30 gacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaa 88  Q
    ||||| ||||||||||||||| |||| || ||||||||||||||  || ||||||||||    
T  17151349 gacatgccaactaggttggcactccgggaaacctccatcctatgccgccaaactctaaa 17151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 18505718 - 18505764
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||||||||||||||||   ||||| |||||||||||||    
T  18505718 catcgacatcccaactaggttggcacgacgagatacctccatcctat 18505764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 20388655 - 20388585
Alignment:
Q  336 ataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    ||||||| |||||||||| |||||| ||| ||||||  |||||||  |||||||||||||| | |||||||    
T  20388655 ataaattttttaaagcaagccgagtgtcataattaccaatacctcgtacattccaatagagaacattcatt 20388585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 24297395 - 24297329
Alignment:
Q  30 gacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    ||||||||||||||||||||| | || || |||||||||||||| ||  ||||| |||||| |||||    
T  24297395 gacatcccaactaggttggcactgcgggaaacctccatcctatgctgtcaaactttaaaattttatt 24297329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 25971019 - 25971061
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  25971019 tcgacatcccaactaggttggcaccccgagatacctccatcct 25971061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 34454961 - 34454887
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaa 87  Q
    ||||||||  || |||||||||||||| ||||||||||  |||||| | ||||||||||||  || |||||||||    
T  34454961 catcaagagacatcatcgacatcccaattaggttggcaccccgagacatctccatcctatgccgccaaactctaa 34454887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 24524098 - 24524143
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||    
T  24524098 tcgacatcccaactaggttggcaccccgagacatctccatcctatg 24524143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 26916684 - 26916639
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||    
T  26916684 tcgacatcccaactaggttggcaccccgagacatctccatcctatg 26916639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 38376871 - 38376931
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | | ||||||||||| |||||||||||||   |||||| |||||||||||||    
T  38376871 catcaagaggtatcatcgacatcctaactaggttggcacctcgagaggcctccatcctatg 38376931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 202 - 470
Target Start/End: Complemental strand, 3056812 - 3056550
Alignment:
Q  202 attatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgcacatcacagta 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  3056812 attatggaaatctgaagttgggtaaaccacaactatccctaaagaaaacaacctcattagggagagaagacaaccaaactgttccttgcacatcacagta 3056713  T
Q  302 gcaagcaaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaat 401  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||      | |||||||  |||||||||||||||||||||||||||||    
T  3056712 tcaagcaaaattagaacaggtttatgagacatgtataaattctgtaaagcaatc------tgagaattattgatacctctaacattccaatagaggaaat 3056619  T
Q  402 tcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  3056618 tcattgagcagtcgtatgattgtcaccccgagcacgggttttaggaggctgctttgccaagacttgttg 3056550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 308 - 471
Target Start/End: Original strand, 14373884 - 14374046
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    ||||| |||||| ||||||||||||| |||||||| ||||||| |||| |||||||| |||||| |||||||||||||||||||| |||||||||||||     
T  14373884 aaaatcagaacaagtttatgagacatatataaatt-tttaaagaaatctgagtatcataattaccgatacctctaacattccaatggaggaaattcattg 14373982  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    ||||||   |||||| |||||||||||||| |||||||| || |||||||||||||||||||||    
T  14373983 agcagtatgatgattatcaccccgagcacgggttttagggggttgcttagccaagacttgttgc 14374046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 14372193 - 14372269
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||  || |||||||||||    
T  14372193 catcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctatgccgccaaactctaaaa 14372269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 24353508 - 24353583
Alignment:
Q  321 gtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagag 396  Q
    ||||||||||||   ||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  24353508 gtttatgagacagagataaattttttaaagtaatccgagtatcaaaattaccgatacctctaacattccaatagag 24353583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 470
Target Start/End: Original strand, 15130163 - 15130255
Alignment:
Q  378 ctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||||||||||||||||||||||||||||| | || ||| ||||||||||||||| | ||| | ||||  ||||||||| || |||||||||||    
T  15130163 ctctaacattccaatagaggaaattcattgatcactcgaatgattgtcaccccgggtacgggatttattaggctgctttgctaagacttgttg 15130255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 471
Target Start/End: Original strand, 9351491 - 9351586
Alignment:
Q  376 acctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||||||||||||| | |||||||||| |||||    |||||| ||||| |||||||| ||||||||||| || || |||||||||||||||    
T  9351491 acctctaacattccaatataagaaattcattgagcaggttgatgattatcacctcgagcacgggttttaggaggttgttttgccaagacttgttgc 9351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 20899033 - 20898950
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||| ||||||||||||||||||||||  ||  || ||||||| |||||| ||| ||||||||||||||||||    
T  20899033 catcaagaggcaacaccgacatcccaactaggttggcaccccaggaaacctccaccctatgctgccaaactctaaaatattatt 20898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 9351141 - 9351214
Alignment:
Q  23 caacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||||||||  || ||| |||||||| |||||    
T  9351141 caacatcgacatcccaactaggttggcaccccgagaaacctccatcctatgccgccaaattctaaaattttatt 9351214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 8462078 - 8462018
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||   ||||||||||||||||||||    
T  8462078 catcaagaggcatcatcgacatcccaactaggttggcacctcgagagacctccatcctatg 8462018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 26522783 - 26522723
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||  || ||||||||    
T  26522783 catcgacatcccaactaggttggcaccccgagagacctccatcctatgccgccaaactcta 26522723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 34338101 - 34338161
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | | |||||||||||||||||||||||||  |||||||||||||||||||||    
T  34338101 catcaagaggaatcatcgacatcccaactaggttggcaccccgagagacctccatcctatg 34338161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 3057008 - 3056926
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    ||||||||  |||||||||||||||||||| ||||| |  |||||| ||||||||||||||  || |||||| |||||||||||    
T  3057008 catcaagagacaacatcgacatcccaactaagttggtaccccgagaaacctccatcctatgccgccaaactc-aaaatattatt 3056926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 3547060 - 3547167
Alignment:
Q  344 tttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtttt 443  Q
    |||||||||||||||| |||||| |||| ||||||| ||| ||||||||||||  |||||||| | |||  |  | |||||||||||| ||||| | |||    
T  3547060 tttaaagcaatccgagaatcagagttaccgatacctttaatattccaatagagacaattcattgatcagaggatttattgtcaccccgtgcacgggattt 3547159  T
Q  444 aggaggct 451  Q
    || |||||    
T  3547160 agaaggct 3547167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 9697174 - 9697261
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    |||||| |||||||| || || || | ||||||||| |||| |||||| |||| ||||||||||| |||||||||||| ||| |||||    
T  9697174 aggtttgtgagacatataaaagttttgtaaagcaattcgagcatcagagttaccgatacctctaatattccaatagagaaaaatcatt 9697261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 19324801 - 19324755
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  19324801 catcgacatcccaactaggttggcaccccgagatacctccatcctat 19324755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 10192923 - 10192863
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||| ||||||||||   | ||||||||||||||||||    
T  10192923 catcaagaggcatcatcgacatcccaattaggttggcacctcaagagacctccatcctatg 10192863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 12436025 - 12435965
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||| || ||| |||||||||||||||||||||||||  |||| | ||||||||||||||    
T  12436025 catcaggaggcatcatcgacatcccaactaggttggcaccccgacaaacctccatcctatg 12435965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 14373764 - 14373857
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgcac 292  Q
    |||| ||||||| |||||  | |||||||||||||| |||||||||||| |  ||  |||| ||||||||||||||| | |||||| |||||||||    
T  14373764 aacagattatggtaatctgtaattgggtaaaccacatctatccctaaagtattca--ctcattagggagagaagacagctaaaccaatccttgcac 14373857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 24353383 - 24353439
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaac 253  Q
    ||||||||||||||||||| |||   |||||||||| ||||||||||||||| ||||    
T  24353383 aacatattatggaaatctatagtcaagtaaaccacatctatccctaaagaaatcaac 24353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 9696878 - 9696925
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||||||||||| |||||||  |||||| ||||||||||||||    
T  9696878 catcgacatcccaactaagttggcacgccgagatacctccatcctatg 9696925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 10138942 - 10138883
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||| ||| | |||||||||||||||||||||||  |||||| ||||| |||||||    
T  10138942 catcaagaggcatcgtcgacatcccaactaggttggcaccccgagacacctctatcctat 10138883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 13575072 - 13575013
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||| | |||| |||||||||||||||||||||| |||| || |||| ||||||||    
T  13575072 catcaagagggaacaccgacatcccaactaggttggcactccgggaaaccttcatcctat 13575013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 13577611 - 13577552
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||| | |||| |||||||||||||||||||||| |||| || |||| ||||||||    
T  13577611 catcaagagggaacaccgacatcccaactaggttggcactccgggaaaccttcatcctat 13577552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 18306748 - 18306794
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||    
T  18306748 catcgacatcccaactaggttggc-acccgagatacctccatcctatg 18306794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 9344538 - 9344469
Alignment:
Q  24 aacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatatt 93  Q
    |||| |||||||||||||||||||||| ||||  | ||||||| |||||| | | |||||| ||||||||    
T  9344538 aacaacgacatcccaactaggttggcactccgcaaaacctccaccctatgcttccaaactcaaaaatatt 9344469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Original strand, 18307042 - 18307119
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagag 396  Q
    |||||| |||||||| || || || | ||||||||| |||| ||| || |||| ||||||||||| ||||||||||||    
T  18307042 aggtttgtgagacatataaaagttttgtaaagcaattcgagcatccgagttaccgatacctctaatattccaatagag 18307119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 27962065 - 27962110
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||    
T  27962065 tcgacatcccaactaggttggcaccccgagacatctccatcctatg 27962110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3546655 - 3546715
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||  ||||||||||||||   ||||||||||||| ||||||    
T  3546655 catcaagaggcatcatcgacatttcaactaggttggcacctcgagagacctccaccctatg 3546715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 8212273 - 8212345
Alignment:
Q  24 aacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||| ||||||  ||| ||||||||||  ||| || ||||||||||||||  ||||||||||||||| |||||    
T  8212273 aacagcgacatttcaattaggttggcaccccgcgaaacctccatcctatgccgctaaactctaaaattttatt 8212345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 13664171 - 13664231
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||  || |||||||||  |||||||||||| | |||||||||||||||| |||||    
T  13664171 catcaagagacatcatcgacatttcaactaggttggtattccgagagacctccatgctatg 13664231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 14641507 - 14641447
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||||||    
T  14641507 catcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatg 14641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 14982458 - 14982386
Alignment:
Q  16 caagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaa 88  Q
    ||||| |||||||||||||||||||| ||||| ||   ||||| || |||||||||||  || ||||||||||    
T  14982458 caagaggcaacatcgacatcccaacttggttgacacctcgagaaacttccatcctatgccgccaaactctaaa 14982386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 24127831 - 24127891
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | | ||||||||||||| |||||||||||   ||||| ||||||||||||||    
T  24127831 catcaagaggtatcatcgacatcccagctaggttggcacctcgagaaacctccatcctatg 24127891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 308 - 471
Target Start/End: Complemental strand, 29820868 - 29820705
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||     
T  29820868 aaaattagaacaggtttatgagacatatataaattctttaaagcaatccgagtatcagaattactgatacctctaatattctaatagagtaaattcattg 29820769  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||  || ||| |||||||| ||||| ||||||||||| ||||| |||||||||||||||    
T  29820768 agcagtctgataattatcaccccgggcacgggttttaggaggttgctttgccaagacttgttgc 29820705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 471
Target Start/End: Complemental strand, 17274472 - 17274310
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||     
T  17274472 aaaatcagaacagttttttgagacatgtataaatt-tttaaagcaatccgagtatcataattactgatacctctaacattccaatggaggaaattcattg 17274374  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||  |||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  17274373 agcagtctgatgattatcaccccgggcacgggttttagggggctgcttagccaagacttgttgc 17274310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 319 - 470
Target Start/End: Complemental strand, 6001188 - 6001037
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtat 418  Q
    ||||||||||||||| ||||| || |||||||||||| ||||||||||||||| |||||||||||||||||||||||| || || ||| | |||||| ||    
T  6001188 aggtttatgagacatatataatttttttaaagcaatctgagtatcagaattaccgatacctctaacattccaatagagaaagtttattgatcagtcgaat 6001089  T
Q  419 gattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||   |||||||||||||| ||||||| ||||||||| | ||||||||||||    
T  6001088 gaggatcaccccgagcacgagttttagtaggctgcttcggcaagacttgttg 6001037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 470
Target Start/End: Original strand, 45269091 - 45269219
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||| ||||||| | ||||||  ||||||||| ||| |||    
T  45269091 tctttaaagcaatctgagtatcagaattacctatacctctaacattccaatagagaaaattcatgaagcagttggatgattaccaccccgagaacgggtt 45269190  T
Q  442 ttaggaggctgcttagccaagacttgttg 470  Q
    |||| ||| ||||| || ||||| |||||    
T  45269191 ttagtaggatgctttgctaagacatgttg 45269219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 466
Target Start/End: Complemental strand, 23595084 - 23594939
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtat 418  Q
    |||||| ||||| || |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||| | | |||||| ||    
T  23595084 aggtttgtgagaaatatataaatt-tttaaagcaatccgagtatcagagttactgatacctctaacattccattataggaaattca-tgatcagtcgaat 23594987  T
Q  419 gattgtcaccccgagcacgtgttttaggaggctgcttagccaagactt 466  Q
    ||||||||||||| ||||| | ||||  ||||||||| || |||||||    
T  23594986 gattgtcaccccgggcacgggatttactaggctgctttgctaagactt 23594939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 466
Target Start/End: Complemental strand, 23604006 - 23603861
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtat 418  Q
    |||||| ||||| || |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||| | | |||||| ||    
T  23604006 aggtttgtgagaaatatataaatt-tttaaagcaatccgagtatcagagttactgatacctctaacattccattataggaaattca-tgatcagtcgaat 23603909  T
Q  419 gattgtcaccccgagcacgtgttttaggaggctgcttagccaagactt 466  Q
    ||||||||||||| ||||| | ||||  ||||||||| || |||||||    
T  23603908 gattgtcaccccgggcacgggatttactaggctgctttgctaagactt 23603861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 329 - 470
Target Start/End: Complemental strand, 21592874 - 21592734
Alignment:
Q  329 gacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcacc 428  Q
    ||||| |||||||| ||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||| | || ||  ||||||||||||    
T  21592874 gacatatataaatt-tttaaagcaatccaagtatcaaagttactgatacctctaacattccaatagaggaaattcattgatcactcaaatgattgtcacc 21592776  T
Q  429 ccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||| ||||| | ||||  |||||||||  | |||||||||||    
T  21592775 ccgggcacgagatttattaggctgctttactaagacttgttg 21592734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 470
Target Start/End: Original strand, 10568600 - 10568728
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||  |||||| |  |||||  ||||||||| ||| |||    
T  10568600 tctttaaagcaatctgagtatcagaattaccgatacctctaacattccaatagagaaaattcatggagcagttgggtgattaccaccccgagaacgggtt 10568699  T
Q  442 ttaggaggctgcttagccaagacttgttg 470  Q
    ||||  |||||||| || ||||| |||||    
T  10568700 ttagtgggctgctttgctaagacatgttg 10568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 16290927 - 16290844
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||| ||||||||||||||||||||||  ||| || |||||||||||||| ||| ||||||||||||||||||    
T  16290927 catcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgctgccaaactctaaaatattatt 16290844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 29840932 - 29840849
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||| ||||  || || ||||||||| |||||    
T  29840932 catcaagaaacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgccgccaatctctaaaattttatt 29840849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 41600795 - 41600712
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||||||| ||||||||||| ||||||  |||||| || | |||||||||  |||||||||||||||||||||    
T  41600795 catcaagaggcaacatcgatatcccaactagattggcaccccgagaaactttcatcctatgccgctaaactctaaaatattatt 41600712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 470
Target Start/End: Complemental strand, 14413000 - 14412908
Alignment:
Q  378 ctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||||||||||||||| |||||||||||| | || ||| ||||||||||||||| | ||| | ||||  ||||||||| || |||||||||||    
T  14413000 ctctaacattccaatacaggaaattcattgatcactcgaatgattgtcaccccgggtacgggatttattaggctgctttgctaagacttgttg 14412908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 17274781 - 17274705
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| |||||||||||||||||||| ||||||||    |||| | |||||||||||| ||| |||||||||||    
T  17274781 catcaagaggcaacatcgacatcccaacttggttggcaccgtgagaaatctccatcctatgctgccaaactctaaaa 17274705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 21593254 - 21593194
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| ||||||||| |||||||||||||||  ||||||||||| |||||||||    
T  21593254 catcaagaggcatcatcgacattccaactaggttggcaccccgagagaccttcatcctatg 21593194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 23595448 - 23595388
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| ||||||||||||||||||||||| |  | |||||||||||||||||||    
T  23595448 catcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcctatg 23595388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 23604370 - 23604310
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| ||||||||||||||||||||||| |  | |||||||||||||||||||    
T  23604370 catcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcctatg 23604310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 10568307 - 10568382
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaa 88  Q
    |||||||| ||||||||||| | |||||||||||||||  |||||| || |||||||||||  || ||||||||||    
T  10568307 catcaagaggcaacatcgacttaccaactaggttggcaccccgagaaacttccatcctatgccgccaaactctaaa 10568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 17274593 - 17274500
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgcac 292  Q
    |||| ||||||||||| |   ||||||||||||||| ||||||||||||||| ||  |||| ||||||||||||| |  |||||| ||| ||||||    
T  17274593 aacaaattatggaaatatgtcgttgggtaaaccacatctatccctaaagaaatca--ctcattagggagagaagatagtcaaaccgttctttgcac 17274500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 19495355 - 19495299
Alignment:
Q  336 ataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaat 392  Q
    ||||||| |||||||||| |||||| ||||| ||||  |||||||||||||||||||    
T  19495355 ataaattttttaaagcaagccgagtgtcagagttaccaatacctctaacattccaat 19495299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 16890032 - 16889985
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||||  |||||| ||||||||| ||||    
T  16890032 catcgacatcccaactaggttggcaccccgagatacctccatcttatg 16889985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 17802740 - 17802815
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaa 88  Q
    |||||||| ||||||| || ||| ||||||||||||||  |||||| |||| |||||||||  | |||||||||||    
T  17802740 catcaagaggcaacattgatatctcaactaggttggcatcccgagaaaccttcatcctatgccgttaaactctaaa 17802815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 6001287 - 6001249
Alignment:
Q  217 agttgggtaaaccacaactatccctaaagaaaacaacct 255  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  6001287 agttaggtaaaccacaactatccctaaagaaatcaacct 6001249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 11837195 - 11837153
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  11837195 tcgacatcccaactaggttggcaccccgagatacctccatcct 11837153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 23124051 - 23124009
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  23124051 tcgacatcccaactaggttggcaccccgagatacctccatcct 23124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 26867527 - 26867453
Alignment:
Q  15 tcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||| ||| |||||||||||||||||||||||||   || || |||||||||||| |  || |||||||||||    
T  26867527 tcaagaggcatcatcgacatcccaactaggttggcacctcgggaaacctccatcctacgccgccaaactctaaaa 26867453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 14413408 - 14413351
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||  ||| |||||||||||||||||||||||||   ||||| |||||||||||    
T  14413408 catcaagcggcatcatcgacatcccaactaggttggcacctcgagacacctccatcct 14413351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 17960110 - 17960159
Alignment:
Q  204 tatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaac 253  Q
    |||||||||||| |||||||||||||||| |||| || ||||||| ||||    
T  17960110 tatggaaatctatagttgggtaaaccacatctattccgaaagaaatcaac 17960159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 45268842 - 45268915
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||||||| ||||||||||| | ||||| |||||||||  |||||| |||||| |||||||  || ||||||||    
T  45268842 catcaagaggcaacatcgacttaccaaccaggttggcaccccgagaaacctccttcctatgccgccaaactcta 45268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 24184758 - 24184818
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||||||    
T  24184758 catcaagagggaacaccgacatcccaactaggttggcatcccgggaaccctccatcctatg 24184818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 26657738 - 26657662
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| | |||| |||||||||||||| ||||||| | || || ||||||||||||||   | |||||||||||    
T  26657738 catcaagaggaaacaccgacatcccaactaagttggcacttcgggaaacctccatcctatgccaccaaactctaaaa 26657662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 308 - 471
Target Start/End: Complemental strand, 103507 - 103345
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    ||||| ||||||||||| |||||||| ||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||| ||| |||||||||     
T  103507 aaaatcagaacaggtttttgagacatatataaat-ctttaaagcaatctgagtatcataattaccgatacctctaacattccaattgagaaaattcattg 103409  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||  |||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  103408 agcagtctgatgattatcaccccgggcacgggttttagggggctgcttagccaagacttgttgc 103345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 103777 - 103701
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| |||||||||||||||||||||||||||||  |||||| | ||||||||||||  |  |||||||||||    
T  103777 catcaagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctatgccgtcaaactctaaaa 103701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 55783 - 55843
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| |||||||||||||||||||||||||  |||| | ||||||||||||||    
T  55783 catcaagcggcatcatcgacatcccaactaggttggcaccccgacacacctccatcctatg 55843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 308 - 471
Target Start/End: Original strand, 24573986 - 24574148
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||     
T  24573986 aaaatcagaacaggtttttgagacatatataaatt-tttaaagcaatccgagtatcataattaccgatacctctaacattccaatggaggaaattcattg 24574084  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    | |||||  |||||| |||||||  ||||| |||||||| |||| |||||| ||||||||||||    
T  24574085 atcagtctgatgattatcaccccaggcacgggttttagggggcttcttagctaagacttgttgc 24574148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 9411416 - 9411503
Alignment:
Q  193 ctacaacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaac 280  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9411416 ctacaacagattatggaaatctgaagttgggtaaaccacaactatccctaaagaaaacaacctcattagggagagaagacaaccaaac 9411503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 377 - 470
Target Start/End: Original strand, 9411509 - 9411602
Alignment:
Q  377 cctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  9411509 cctctaacattccaatagaggaaattcattgagcagttgtatgattgtcaccccgagcacgagttttaggaggctgctttaccaagacttgttg 9411602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 464
Target Start/End: Complemental strand, 28780017 - 28779869
Alignment:
Q  314 agaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagt 413  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||  ||||||    
T  28780017 agaaaaggtttgtgagacagatataaattctttaaagcaatccgagtat--gaattactgatacctctaacattccaatagagaaaattcatggagcagt 28779920  T
Q  414 cgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagac 464  Q
    || ||||||  ||||||||| ||| ||||||| ||| ||||| || |||||    
T  28779919 cggatgattaccaccccgagaacgggttttagtaggttgctttgctaagac 28779869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 470
Target Start/End: Complemental strand, 14073611 - 14073483
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||  |||||| | ||||||  ||||||||  ||| |||    
T  14073611 tctttaaagcaatctgagtatcagaattaccgatacctctaacattccaataaagaaaattcatggagcagttggatgattaccaccccgataacgggtt 14073512  T
Q  442 ttaggaggctgcttagccaagacttgttg 470  Q
    |||| ||||||||| || ||||| |||||    
T  14073511 ttagtaggctgctttgctaagacctgttg 14073483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 470
Target Start/End: Complemental strand, 14383639 - 14383511
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||  |||||| | ||||||  ||||||||  ||| |||    
T  14383639 tctttaaagcaatctgagtatcagaattaccgatacctctaacattccaataaagaaaattcatggagcagttggatgattaccaccccgataacgggtt 14383540  T
Q  442 ttaggaggctgcttagccaagacttgttg 470  Q
    |||| ||||||||| || ||||| |||||    
T  14383539 ttagtaggctgctttgctaagacctgttg 14383511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 24573865 - 24573958
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgcac 292  Q
    |||| |||||||||||||  |||||||||||||||| ||||||||||||||| ||  |||| ||||||||||||| |  ||||||| |||||||||    
T  24573865 aacaaattatggaaatctgtagttgggtaaaccacatctatccctaaagaaatca--ctcattagggagagaagatagtcaaaccaatccttgcac 24573958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 12727872 - 12727812
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||| ||||||||||    
T  12727872 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacccccatcctatg 12727812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 1748315 - 1748374
Alignment:
Q  14 atcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||||| ||||||||||||||||||||||||| || |||| ||||||||| ||||    
T  1748315 atcaagaagcatcatcgacatcccaactaggttggcagtctgagatacctccatcatatg 1748374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 11295381 - 11295450
Alignment:
Q  17 aagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||  || ||||||||    
T  11295381 aagaggcaacatcgacatccaaactaggttggcactccgagaaacctctatcctatgccgccaaactcta 11295450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 3728093 - 3728144
Alignment:
Q  379 tctaacattccaatagaggaaattcattaagcagtcgtatgattgtcacccc 430  Q
    |||||||||||||||||||||||||||| | |||||  ||||||||||||||    
T  3728093 tctaacattccaatagaggaaattcattgatcagtcaaatgattgtcacccc 3728144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 18270316 - 18270363
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||    
T  18270316 catcgacatcccaactaagttggcaccccgagagacctccatcctatg 18270363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 11295564 - 11295622
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacct 255  Q
    |||| |||||||||||||  |||| ||||||||||| ||||||||||||||| ||||||    
T  11295564 aacagattatggaaatctgtagttaggtaaaccacatctatccctaaagaaatcaacct 11295622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 11295687 - 11295745
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatac 377  Q
    |||||||||||| |  |||||||||||| | |||||||||||||||||||||| |||||    
T  11295687 aggtttatgagaaaaatataaattctttcacgcaatccgagtatcagaattaccgatac 11295745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 14073866 - 14073800
Alignment:
Q  7 ggacatcatcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||| |||||||| ||||||||||| | |||||||||||||||  | |||| ||||||||||||||    
T  14073866 ggacagcatcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatg 14073800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 14383894 - 14383828
Alignment:
Q  7 ggacatcatcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||| |||||||| ||||||||||| | |||||||||||||||  | |||| ||||||||||||||    
T  14383894 ggacagcatcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatg 14383828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 28780252 - 28780215
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggca 50  Q
    |||||||| |||||||||||||||||||||||||||||    
T  28780252 catcaagaggcaacatcgacatcccaactaggttggca 28780215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 10608315 - 10608378
Alignment:
Q  9 acatcatcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||| ||  ||||||||||||||||||||| ||| ||  ||| |||||||||||||    
T  10608315 acatcatcaagaggcgtcatcgacatcccaactaggttagcactcaaagatacctccatcctat 10608378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 22849544 - 22849591
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||||  |||||| ||||| ||||||||    
T  22849544 catcgacatcccaactaggttggcaccccgagatacctctatcctatg 22849591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 24573678 - 24573753
Alignment:
Q  14 atcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    ||||||| ||||||||||||||||||||||||||| |  |||||| | || ||| |||||  || |||||||||||    
T  24573678 atcaagaggcaacatcgacatcccaactaggttggtagcccgagaaatcttcattctatgccgccaaactctaaaa 24573753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 3410418 - 3410360
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactc 84  Q
    |||||||||||||||||| ||||||  |||||| | ||||||||| || ||||||||||    
T  3410418 catcgacatcccaactagattggcatcccgagatatctccatcctgtgttgctaaactc 3410360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 20936834 - 20936876
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  20936834 tcgacatcccaactaggttggcaccccgagatacctccatcct 20936876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 12163466 - 12163429
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggca 50  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  12163466 catcaagaggcaacaccgacatcccaactaggttggca 12163429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3399558 - 3399618
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||| | ||||||||||| | |||||||||||||||  |||||| |||| |||||||||    
T  3399558 catcaaaaggcaacatcgacttaccaactaggttggcaccccgagaaaccttcatcctatg 3399618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 308 - 470
Target Start/End: Original strand, 27036253 - 27036414
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatta 407  Q
    |||||||||| |||||| |||||||| |||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||      
T  27036253 aaaattagaataggtttgtgagacatatataaatt-tttaaagcaatccaagtatcagagttactgatacctctaacattccaatagaggaaattcatcg 27036351  T
Q  408 agcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    | |||||| ||||||||||||||||||||| | ||||  ||||| ||| || |||||||||||    
T  27036352 atcagtcgaatgattgtcaccccgagcacgagatttattaggctactttgctaagacttgttg 27036414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 471
Target Start/End: Original strand, 908009 - 908104
Alignment:
Q  376 acctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||||||||||||||||||||||||||||||||  || || ||||||||||||||| | ||||||| |||||| || | ||| |||||||||    
T  908009 acctctaacattccaatagaggaaattcattaagcaggagtgtgcttgtcaccccgagcaggggttttagaaggctgttttggcaatacttgttgc 908104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 27035859 - 27035919
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  27035859 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatg 27035919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 34517750 - 34517674
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||||| ||||||||||||||||  |||||||||  |||||| |||||||||||||| ||| |||||||||||    
T  34517750 catcaagaagaaacatcgacatcccaataaggttggcatcccgagaaacctccatcctatgctgccaaactctaaaa 34517674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 471
Target Start/End: Original strand, 10424166 - 10424261
Alignment:
Q  376 acctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||| |||||||||||||||||||||||| ||||||    || || |||||||||||||  ||||||||||| || || |||||||||||||||    
T  10424166 acctctcacattccaatagaggaaattcattgagcagtttgctgtttatcaccccgagcacaggttttaggaggttgttttgccaagacttgttgc 10424261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 13309386 - 13309444
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatccta 71  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  13309386 catcaagaggcatcatcgacatcccaactaggttggcaccccgagagacctccatccta 13309444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10423808 - 10423868
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| |||||||||||||||||||||||||||||  |||||| ||||||||| ||||    
T  10423808 catcaagaggcaacatcgacatcccaactaggttggcaccccgagaaacctccatcttatg 10423868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 34528926 - 34529008
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattat 95  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| || ||||||||||||||  || |||||||||||| ||||    
T  34528926 catcaagaggaaacagcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgccaaactctaaaattttat 34529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 471
Target Start/End: Original strand, 1624414 - 1624507
Alignment:
Q  378 ctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    ||||||||||||||||||||||||||||| ||  |||  ||| || |||||||||||||  |||| ||  |||||||| || ||||||||||||    
T  1624414 ctctaacattccaatagaggaaattcattgagtcgtcagatggttatcaccccgagcacaagtttaagtgggctgctttgcgaagacttgttgc 1624507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 35877045 - 35877008
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggca 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35877045 catcaagaagcaacatcgacatcccaactaggttggca 35877008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 907666 - 907742
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    ||||||||  || |||||||||||||||||| ||||||  | |||||||||||||||||||  || |||||||||||    
T  907666 catcaagagacatcatcgacatcccaactagattggcaccctgagagacctccatcctatgccgccaaactctaaaa 907742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 21813234 - 21813174
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  21813234 catcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 21813174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 13309638 - 13309713
Alignment:
Q  362 tcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacg 437  Q
    ||||| |||| |||||||||||||||||||||||||| ||||| | | |||| |  |||||||||||||| |||||    
T  13309638 tcagagttaccgatacctctaacattccaatagaggatattcagtgatcagtggattgattgtcaccccgtgcacg 13309713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 21464828 - 21464782
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  21464828 catcgacatcccaactaggttggcaccccgagatacctccatcctat 21464782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 41357428 - 41357484
Alignment:
Q  336 ataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaat 392  Q
    ||||||| |||||||||| |||||| ||||| ||||  |||||||||||||||||||    
T  41357428 ataaattttttaaagcaagccgagtgtcagagttaccaatacctctaacattccaat 41357484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 24885147 - 24885088
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||| ||  |||||||||||| ||||||||||||  |||||| |||||||||||||    
T  24885147 catcaagaggcgtcatcgacatccctactaggttggcatcccgagatacctccatcctat 24885088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 21460629 - 21460567
Alignment:
Q  344 tttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    |||||||||| ||||||||| |||||||  ||||| | ||||||||||||||| | |||||||    
T  21460629 tttaaagcaagccgagtatcggaattaccaataccgcgaacattccaatagagaacattcatt 21460567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 22522820 - 22522862
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  22522820 tcgacatcccaactaggttggcaccccgagatacctccatcct 22522862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 29302952 - 29303005
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatgatgcta 79  Q
    |||||||||||||| ||||||||||   |||||| ||||||||||||| |||||    
T  29302952 catcgacatcccaattaggttggcatctcgagaggcctccatcctatgctgcta 29303005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 12629267 - 12629339
Alignment:
Q  24 aacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||| ||||||||||||||| ||||||  ||| || |||||| |||||||  || |||||||||||| |||||    
T  12629267 aacaccgacatcccaactagattggcatcccgggaaacctccgtcctatgccgccaaactctaaaattttatt 12629339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 16280502 - 16280442
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| |||||||||||||| ||| ||||||  |||||| ||||||||||||||    
T  16280502 catcaagcggcatcatcgacatcccaattagattggcaccccgagacacctccatcctatg 16280442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 19054383 - 19054451
Alignment:
Q  5 atggacat-catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||| |||||||| | |||| ||||||||||||||||||||||  ||| |  |||||||||||||    
T  19054383 atggacatgcatcaagaggaaacaccgacatcccaactaggttggcaccccggggaacctccatcctat 19054451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 31893169 - 31893125
Alignment:
Q  29 cgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||||||||||||||||  ||||||  |||||||||||||    
T  31893169 cgacatcccaactaggttggcatcccgagaagcctccatcctatg 31893125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 335 - 470
Target Start/End: Original strand, 5781429 - 5781564
Alignment:
Q  335 tataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagc 434  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||| |  ||||| ||||   |||||||||||    
T  5781429 tataaattctttaaagcaatccgagtatcagaattaatgatacctctaacaatccaatagagaaaattcattgattagtcgaatgaggatcaccccgagc 5781528  T
Q  435 acgtgttttaggaggctgcttagccaagacttgttg 470  Q
    ||| ||||||| ||||||||| | ||||||||||||    
T  5781529 acgagttttagaaggctgcttcggcaagacttgttg 5781564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 39324353 - 39324412
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  39324353 catcaagaggcatcatcgacatcccaactaggttggcactccgagagacctccatcctat 39324412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 28682764 - 28682824
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  28682764 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatg 28682824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 11725706 - 11725659
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  11725706 catcgacatcccaattaggttggcactccgagagacctccatcctatg 11725659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 35341526 - 35341439
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    |||||| |||||||| || |  || ||||||||||| |||| |||||| |||| ||||||||||| |||||||||||| |||||||||    
T  35341526 aggtttgtgagacatataaattttttttaaagcaattcgagcatcagagttaccgatacctctaatattccaatagagaaaattcatt 35341439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5781091 - 5781147
Alignment:
Q  17 aagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||| |||||||||||||||||||||||||||||  |||||| || |||||||||||    
T  5781091 aagaggcaacatcgacatcccaactaggttggcatcccgagaaacttccatcctatg 5781147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 21877908 - 21877968
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  21877908 catcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 21877968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 10720952 - 10720869
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| | || |||||||||| |||||||||||   | ||||| |||||| ||||||| |||||||||||||||| |||||    
T  10720952 catcaagaggaaatatcgacatcctaactaggttggtgcttcgagaaacctccgtcctatgctgctaaactctaaaattttatt 10720869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 19068705 - 19068774
Alignment:
Q  17 aagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||| ||||||||||||||| |||||||||||||  | |||| ||||||||||||||  || ||||||||    
T  19068705 aagaggcaacatcgacatccaaactaggttggcaccctgagaaacctccatcctatgccgccaaactcta 19068774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 2259404 - 2259464
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| || ||||||||||||||    
T  2259404 catcaagaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcctatg 2259464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 5784492 - 5784543
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctc 64  Q
    |||||||| ||| ||||||||| |||||||||||||||  ||||||||||||    
T  5784492 catcaagaggcatcatcgacattccaactaggttggcatcccgagagacctc 5784543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 11725334 - 11725267
Alignment:
Q  378 ctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttag 445  Q
    ||||||||||||||||||||||||||||| |  |||||   |||  |||||||||||||| |||||||    
T  11725334 ctctaacattccaatagaggaaattcattgataagtcgagagatgttcaccccgagcacgggttttag 11725267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 29998821 - 29998883
Alignment:
Q  329 gacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaat 392  Q
    ||||| |||||||| ||||||||||||| ||||||| | |||  ||||||||||||||||||||    
T  29998821 gacatatataaatt-tttaaagcaatccaagtatcaaagttattgatacctctaacattccaat 29998883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 34995469 - 34995516
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||||  |||||| | ||||||||||||    
T  34995469 catcgacatcccaactaggttggcaccccgagataactccatcctatg 34995516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 6129711 - 6129777
Alignment:
Q  22 gcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaa 88  Q
    ||||||||||||||||||| |||||||||  ||||||  |||||||| ||||  || ||||||||||    
T  6129711 gcaacatcgacatcccaaccaggttggcaccccgagaagcctccatcatatggcgccaaactctaaa 6129777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 15614808 - 15614748
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||||||    
T  15614808 catcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatg 15614748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 21711545 - 21711605
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||||||    
T  21711545 catcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatg 21711605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 29998578 - 29998638
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||  || |||||||||||||||||||||||||   | ||||||||||||| ||||    
T  29998578 catcaagagacatcatcgacatcccaactaggttggcatctcaagagacctccatcgtatg 29998638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 31329284 - 31329344
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| ||||||||| |||||||| |||| |  |||||| ||||||||||||||    
T  31329284 catcaagaggcatcatcgacattccaactagattggtatcccgagatacctccatcctatg 31329344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 35341959 - 35341900
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||  || ||||||||||||||||| |||||||  |||||| ||||||||||||||    
T  35341959 catcaagagtcatcatcgacatcccaacta-gttggcaccccgagatacctccatcctatg 35341900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 39324699 - 39324727
Alignment:
Q  378 ctctaacattccaatagaggaaattcatt 406  Q
    |||||||||||||||||||||||||||||    
T  39324699 ctctaacattccaatagaggaaattcatt 39324727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 377 - 470
Target Start/End: Original strand, 8667397 - 8667490
Alignment:
Q  377 cctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  8667397 cctctaacattccaatagaggaaattcattgagcagttgtatgattgtcaccccgagcacgagttttaggaggttgctttgccaagacttgttg 8667490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 8667303 - 8667397
Alignment:
Q  191 ccctacaacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattcc 286  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  8667303 ccctacaacagattatg-aaatctgaagttgggtaaaccacaactatccctaaagaaaacaacctcattagggagagaagacaaccaaaccgttcc 8667397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 470
Target Start/End: Original strand, 39407075 - 39407203
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||| ||| ||||||||  |||||| | ||||||  ||||||||| ||| |||    
T  39407075 tctttaaagcaatctcagtatcagaattactgatacctctaacattccaattgagaaaattcatggagcagttggatgattaccaccccgagaacgggtt 39407174  T
Q  442 ttaggaggctgcttagccaagacttgttg 470  Q
    |||| ||||||||| || ||||| |||||    
T  39407175 ttagtaggctgctttgctaagacctgttg 39407203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 470
Target Start/End: Original strand, 10691822 - 10691973
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtat 418  Q
    |||||| |||||||| |||||||| |||||||||||  | |||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||       
T  10691822 aggtttgtgagacatatataaattttttaaagcaatttgtgtattagaattaccgatacctctaacattccaatagaggaaattcattgatcagtcgaga 10691921  T
Q  419 gattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||  |||||||||||||  ||||||| ||| ||| | || || ||||||||    
T  10691922 gatgttcaccccgagcacaagttttagaaggatgcgttgctaaaacttgttg 10691973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 470
Target Start/End: Original strand, 10905588 - 10905739
Alignment:
Q  319 aggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtat 418  Q
    |||||| |||||||| |||||||| |||||||||||  | |||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||       
T  10905588 aggtttgtgagacatatataaattttttaaagcaatttgtgtattagaattaccgatacctctaacattccaatagaggaaattcattgatcagtcgaga 10905687  T
Q  419 gattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||  |||||||||||||  ||||||| ||| ||| | || || ||||||||    
T  10905688 gatgttcaccccgagcacaagttttagaaggatgcgttgctaaaacttgttg 10905739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 381 - 471
Target Start/End: Original strand, 3007605 - 3007695
Alignment:
Q  381 taacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttgc 471  Q
    |||||||||||| ||||||||||||| |||||||  |||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  3007605 taacattccaattgaggaaattcattgagcagtctgatgattatcaccccgtgcacgggttttagggggctgcttagccaagacttgttgc 3007695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 353 - 471
Target Start/End: Original strand, 33040938 - 33041056
Alignment:
Q  353 atccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctg 452  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||   |||||| |||||| | ||||| |||| ||| |||||    
T  33040938 atccgagtatcagaattactgatacctctaaaattccaatagagaaaattcattgaacagtttgatgattatcaccctgggcacgggtttcagggggctg 33041037  T
Q  453 cttagccaagacttgttgc 471  Q
    ||| |||||||||||||||    
T  33041038 ctttgccaagacttgttgc 33041056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 8667105 - 8667187
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| ||||||||||||||| ||||||||||| |  |||||| ||||||||||||||  || ||||||||||||||||||    
T  8667105 catcaagaggcaacatcgacatcctaactaggttgg-accccgagaaacctccatcctatgccgccaaactctaaaatattatt 8667187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 414
Target Start/End: Original strand, 44673996 - 44674092
Alignment:
Q  314 agaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagt 413  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||| ||| | |||||| |||||||||||||   || ||||| ||||||||| ||||||    
T  44673996 agaacaggtttttgagacatatataaatt-tttaaagcaatccgaatatgataattaccgatacctctaaca---cattagagaaaattcattgagcagt 44674091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 33040582 - 33040664
Alignment:
Q  14 atcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||  ||||||||||||||||||||||||||||  |||||| ||||||||| ||||  |  |||||||||||| |||||    
T  33040582 atcaagagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgccgtcaaactctaaaattttatt 33040664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 39406824 - 39406897
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||||||| ||||||||||| | |||||||||||||||  |||||| ||||||||||||||  || ||||||||    
T  39406824 catcaagaggcaacatcgacttaccaactaggttggcaccccgagaaacctccatcctatgccgccaaactcta 39406897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 1924661 - 1924721
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | | |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  1924661 catcaagatgtatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 1924721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 7190145 - 7190085
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||   ||||||||||| ||||||||    
T  7190145 catcaagaggcatcatcgacatcccaactaggttggcacctcgagagacctcaatcctatg 7190085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 19904620 - 19904680
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||  || |||||||||||||||||||||||||  || ||||||||||||||||||    
T  19904620 catcaagagacatcatcgacatcccaactaggttggcaccccaagagacctccatcctatg 19904680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 44673682 - 44673758
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| |||||||||||||||||||||||||||||  |||  | | ||||||||||||  || |||||||||||    
T  44673682 catcaagaggcaacatcgacatcccaactaggttggcaccccgcaaaatctccatcctatgccgccaaactctaaaa 44673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 44673869 - 44673962
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaacctcagtagggagagaagacaaccaaaccattccttgcac 292  Q
    |||| |||||||||||||  |||| ||||||||||| ||||||||||||||| ||  |||| ||||||||||||| |  ||||||  |||||||||    
T  44673869 aacaaattatggaaatctgtagtttggtaaaccacatctatccctaaagaaatca--ctcattagggagagaagatagtcaaaccgatccttgcac 44673962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 11485219 - 11485264
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||    
T  11485219 tcgacatcccaactaggttggcaccccgagaggcctccatcctatg 11485264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 34512131 - 34512055
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| ||| |||||||||||||||||||||||||  ||| ||||||| ||| ||| | ||| |||||| ||||    
T  34512131 catcaagaggcatcatcgacatcccaactaggttggcaccccgggagaccttcattctacgctgccaaactcgaaaa 34512055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 18234300 - 18234253
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  18234300 catcgacattccaactaggttggcaccccgagatacctccatcctatg 18234253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 18025424 - 18025470
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||||||||||||||||  |||| | |||||||||||||    
T  18025424 catcgacatcccaactaggttggcaccccgaaatacctccatcctat 18025470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 33040775 - 33040876
Alignment:
Q  197 aacatattatggaaatctaaagttgggtaaaccacaactatccctaaagaaaacaac------ctcagtagggagagaagacaaccaaaccattccttgc 290  Q
    |||| |||||||||||||  |||||||||||||||  | ||||||||||||| ||||      |||| |||| |||||||||| |||||||  |||||||    
T  33040775 aacagattatggaaatctgtagttgggtaaaccacgtccatccctaaagaaatcaacatttaactcattaggaagagaagacagccaaaccgatccttgc 33040874  T
Q  291 ac 292  Q
    ||    
T  33040875 ac 33040876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 6192643 - 6192579
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaat 90  Q
    |||||||||||||||||||||||||   ||||| ||||||||| ||||  || |||||| |||||    
T  6192643 catcgacatcccaactaggttggcacctcgagatacctccatcttatgccgccaaactcgaaaat 6192579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 18233987 - 18233927
Alignment:
Q  346 taaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    ||||||||| |||| |||||| |||| ||||| ||||| |||||||||||| ||| |||||    
T  18233987 taaagcaattcgagcatcagagttaccgatacttctaatattccaatagagaaaaatcatt 18233927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 20380221 - 20380281
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| ||||| ||||||||||||||||  |  |||||||||||||||| ||||    
T  20380221 catcaagaggcatcatcggcatcccaactaggttgaaaccccgagagacctccatcttatg 20380281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 566 - 677
Alignment:
Q  344 tttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtttt 443  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||| || ||| | ||||||  ||||||||| ||| |||||    
T  566 tttaaagcaatctgagtatcagaattaccgacacctctaacattccaatagagaaaattcattgagtagttggatgattaccaccccgagaacgggtttt 665  T
Q  444 aggaggctgctt 455  Q
    || |||||||||    
T  666 agtaggctgctt 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 464
Target Start/End: Original strand, 6500 - 6622
Alignment:
Q  342 tctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgtt 441  Q
    ||||||||||| |  ||||||||||||||| ||||||||||||||| |||||||  ||||||||| || ||| | ||||||  ||||| ||| ||| |||    
T  6500 tctttaaagcattatgagtatcagaattaccgatacctctaacatttcaatagataaaattcattgagaagttggatgattaccaccctgagaacgggtt 6599  T
Q  442 ttaggaggctgcttagccaagac 464  Q
    |||| ||||||||| || |||||    
T  6600 ttagtaggctgctttgctaagac 6622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 314 - 387
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactcta 86  Q
    |||||||| ||||||||||| | |||||||| ||||||  |||||| ||||||||||||||  || ||||||||    
T  314 catcaagaggcaacatcgacttaccaactagtttggcaccccgagaaacctccatcctatgccgccaaactcta 387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 470
Target Start/End: Original strand, 2345 - 2501
Alignment:
Q  314 agaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagt 413  Q
    |||| |||||| |||||||  |||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||| ||| ||| ||||  ||||||    
T  2345 agaaaaggtttgtgagacaaatataaattctttaaagcaatccaagcgtcagaattacggatacctctaacattccaattgagaaaaatcatggagcagt 2444  T
Q  414 cgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    || ||||||  || |||||| ||  ||||||| ||| ||||| || ||||| |||||    
T  2445 cggatgattaccagcccgagaacaggttttagtaggttgctttgctaagacctgttg 2501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 6937 - 6839
Alignment:
Q  308 aaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    |||||||||  |||||| |||||||  || ||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||| |||| |||||||    
T  6937 aaaattagactaggtttgtgagacaaataaaaattctttaaagcaagacgagtatcagcattaccgatacctctaacattccaataaaggatattcatt 6839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 470
Target Start/End: Original strand, 14582 - 14722
Alignment:
Q  329 gacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcacc 428  Q
    ||||| |||||||| ||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||| | | || ||| | ||||||||||    
T  14582 gacatatataaatt-tttaaagcaatccaagtatcaaagttactgatacctctaacattccaatagaggaaattcaatgatcactcgaaagattgtcacc 14680  T
Q  429 ccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
        ||||| | ||||  ||||||||| || |||||||||||    
T  14681 aaaggcacgagatttaataggctgctttgctaagacttgttg 14722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 14337 - 14397
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  14337 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatg 14397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 11485 - 11425
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||||||    
T  11485 catcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatg 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 15666 - 15770
Alignment:
Q  302 gcaagcaaaattagaacaggtttatgagacatgtataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaat 401  Q
    ||||| ||||| || | ||||||  ||||||| ||||||||  ||||||||||||||||||||||||||| |||| ||||| ||| ||||| ||||||||    
T  15666 gcaagaaaaataagcataggtttgcgagacatatataaatttattaaagcaatccgagtatcagaattaccgatatctctaccatcccaatggaggaaat 15765  T
Q  402 tcatt 406  Q
    |||||    
T  15766 tcatt 15770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 1501 - 1584
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaatattatt 96  Q
    |||||||| |||||| ||||||||||||||||||||||  ||| || |||||||||||||| | | ||||||||||||||||||    
T  1501 catcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgcttccaaactctaaaatattatt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 21881 - 21941
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  21881 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatg 21941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 63282 - 63188
Alignment:
Q  376 acctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||||||||||||||||||| |||||||||| |  ||||  |||||||||||| || ||||| | ||||| ||||||||| || |||||||||||    
T  63282 acctctaacattccaatagatgaaattcattgattagtcaaatgattgtcacctcgggcacgggatttagtaggctgctttgctaagacttgttg 63188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 470
Target Start/End: Original strand, 5711 - 5803
Alignment:
Q  378 ctctaacattccaatagaggaaattcattaagcagtcgtatgattgtcaccccgagcacgtgttttaggaggctgcttagccaagacttgttg 470  Q
    |||||||||||||||| |||||||||||| | || ||| ||||||||||||||| | ||| | ||||  ||||||||| || |||||||||||    
T  5711 ctctaacattccaatacaggaaattcattgatcactcgaatgattgtcaccccgggtacgggatttattaggctgctttgctaagacttgttg 5803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 5303 - 5360
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||  ||| |||||||||||||||||||||||||   ||||| |||||||||||    
T  5303 catcaagcggcatcatcgacatcccaactaggttggcacctcgagacacctccatcct 5360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 2853 - 2793
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| ||||||||||||||||||||||||||| |   ||||| ||||||||||||||    
T  2853 catcaagaggcaacatcgacatcccaactaggttggtacctcgagaaacctccatcctatg 2793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 19575 - 19635
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  19575 catcaagcggcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 19635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 16095 - 16035
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||  ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  16095 catcaagcggcatcatcgacatcccaactaggttggcactccgagacacctccatgctatg 16035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 129492 - 129432
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||  || |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  129492 catcaagagtcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 129432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 307309 - 307249
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    ||||||||  || |||||||||||||||||||||||||  |||||| ||||||||||||||    
T  307309 catcaagagtcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatg 307249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 21291 - 21240
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctc 64  Q
    |||||||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  21291 catcaagaggcatcatcgacatcccaactaggttggcaccccgagagacctc 21240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 123852 - 123911
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    ||||||||  || |||||||||||||||||||||||||  |||||| |||||||||||||    
T  123852 catcaagagacatcatcgacatcccaactaggttggcaccccgagatacctccatcctat 123911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 35530 - 35576
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  35530 catcgacatcccaactaggttggcaccccgagatacctccatcctat 35576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 39293 - 39363
Alignment:
Q  336 ataaattctttaaagcaatccgagtatcagaattacagatacctctaacattccaatagaggaaattcatt 406  Q
    ||||||| |||||||||| ||||||||| |||||||  ||||| | ||||||||||||||| | |||||||    
T  39293 ataaattttttaaagcaagccgagtatcggaattaccaataccgcgaacattccaatagagaacattcatt 39363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 4510 - 4450
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | | ||| |||||||||||||||||||||   ||||||||||||||||||||    
T  4510 catcaagaggtatcattgacatcccaactaggttggcacctcgagagacctccatcctatg 4450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 36679 - 36755
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatgatgctaaactctaaaa 89  Q
    |||||||| ||||||||||||||||||||||||||| |   ||||| ||||||| | ||||  || |||||||||||    
T  36679 catcaagaggcaacatcgacatcccaactaggttggtacctcgagaaacctccaacttatgccgccaaactctaaaa 36755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 20692 - 20736
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcct 70  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  20692 catcgacatcccaactaggttggcaccccgagacacctccatcct 20736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 173926 - 173879
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||||  |||||| ||||||||| ||||    
T  173926 catcgacatcccaactaggttggcaccccgagatacctccatcttatg 173879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 7519 - 7565
Alignment:
Q  26 catcgacatcccaactaggttggcaatccgagagacctccatcctat 72  Q
    |||| ||||||||||||||||||||  |||||| |||||||||||||    
T  7519 catctacatcccaactaggttggcaccccgagatacctccatcctat 7565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 835 - 798
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggca 50  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  835 catcaagaggcaacaccgacatcccaactaggttggca 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 2537 - 2492
Alignment:
Q  28 tcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||    
T  2537 tcgacatcccaactaggttggcaccccgagacatctccatcctatg 2492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 2365 - 2305
Alignment:
Q  13 catcaagaagcaacatcgacatcccaactaggttggcaatccgagagacctccatcctatg 73  Q
    |||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||||||    
T  2365 catcaagagggaacaccgacatcccaactaggttggcaccccgggaaccctccatcctatg 2305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University