View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_high_9 (Length: 366)
Name: NF6595_high_9
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 40081147 - 40081488
Alignment:
| Q |
11 |
atgaagaataaattattatgattggcatttattgatgcaatacaagagtttgaatcatgagagtctaatgnnnnnnnnnnc--tctattttcaaacaaaa |
108 |
Q |
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| T |
40081147 |
atgaagaataaattattatgattggcatttattgatgcaatacaagagtttgaatcatgagagtctaatgaaaaaaaaaacactctattttcaaacaaaa |
40081246 |
T |
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| Q |
109 |
aagaagagcaagaaacaccctccannnnnnnctccctatttctccttgaacatcacctatcacatttataattcctaaactacaacaatggaggaaatag |
208 |
Q |
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| T |
40081247 |
aagaagagcaagaaacaccctccattttttactccctatttctccttgaacatcacctatcacatttataattcctaaactacaacaatggagaaaatag |
40081346 |
T |
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| Q |
209 |
agaagatcctctcttagaaattagaaggggtcgaatagcaactacccaattgtggccataatatcatggtttagtgcatgtttgagtttgacaaaattca |
308 |
Q |
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| T |
40081347 |
agaagatcctctcttagaaattagaaggggtcgaatagcaactacccaattgtggccataatatcatggtttagtgcatgtttgagtttgacaaaattca |
40081446 |
T |
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| Q |
309 |
cgacgaaccatagtaatattgaaaaagttacactttagtaac |
350 |
Q |
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| T |
40081447 |
cgacgaaccatagtaatattgaaaaagttacactttagtaac |
40081488 |
T |
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