View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_11 (Length: 332)
Name: NF6595_low_11
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 10945451 - 10945650
Alignment:
| Q |
7 |
gctccaaggacaacttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaatactgaaagctaagatgccaattacctgatactattt |
106 |
Q |
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| T |
10945451 |
gctccaaggacaacttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaatactgaaagctaagatgccaattacctgatactattt |
10945550 |
T |
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| Q |
107 |
gattctaacattccatgtaatgcaataataaaagtccatattttcaagttgctacctatgcaatgttattggtccaggtttgaatggcataagggctaac |
206 |
Q |
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| T |
10945551 |
gattctaacattccatgtaatgcaataataaaagtccatattttcaagttgctacctatgcaatgttattggtccaggtttgaatggcataagggttaac |
10945650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 10945647 - 10945751
Alignment:
| Q |
228 |
taacattccttatttgttgatccaaactgggcaaaaatggtcgtactatgccaaataaaagctttaatattgatattttaatagcactttgtagtttgta |
327 |
Q |
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| T |
10945647 |
taacattccttatttgttgatccaaactgggcaaaaatggttgtactatgccaaataaaagctttaatattgatattttaatagcactttgtagtttgta |
10945746 |
T |
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| Q |
328 |
taata |
332 |
Q |
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| T |
10945747 |
taata |
10945751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 42010656 - 42010609
Alignment:
| Q |
21 |
ttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaata |
71 |
Q |
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| T |
42010656 |
ttcagtcaccaaccaactctaaga---gtattgtctaacaaggaaacaata |
42010609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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