View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_12 (Length: 326)
Name: NF6595_low_12
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 40538078 - 40537785
Alignment:
| Q |
19 |
tttgcagtcatgatgggaagtagcttgaaggtcactctcgaattttgggtcgatgcagtgtgtatagagttgagtttttgggaattctttacgatcttca |
118 |
Q |
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| T |
40538078 |
tttgcaatcatgatgagaagtggcttgaaggtcactctcaaattttggatcgatacagtgtgtatagagttgaacttttagaaatcctttacaatcttca |
40537979 |
T |
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| Q |
119 |
aatcgttagagataaaggtttttcaaaggtggagctacatttctttcnnnnnnnnnnngtggagctacatgttgattctagtatggtagtgcatacattg |
218 |
Q |
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| T |
40537978 |
aatcgttagagatagaggtttttcaaaggtggagctacatttctttcaaaaaaaa---gtggagctacatgttgattccagtgtgatagtgcatacattg |
40537882 |
T |
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| Q |
219 |
cagtttcataaggatggaagtcttgttggttggcgactcatccaaaaaattcgtagattgttagctttggagtggaaaattaaagtgtgtcattctt |
315 |
Q |
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| T |
40537881 |
cagtttcggaaggatggaagtcttgttggttggtgactcatccaaaaaattcgtagattgttagctttggagtggaaaattaaagtgtgtcattctt |
40537785 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 1581074 - 1581140
Alignment:
| Q |
227 |
taaggatggaagtcttgttggttggcgactcatccaaaaaattcgtagattgttagctttggagtgg |
293 |
Q |
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| T |
1581074 |
taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgg |
1581140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 3663832 - 3663748
Alignment:
| Q |
231 |
gatggaagtcttgttggttggcgactcatccaaaaaattcgtagattgttagctttggagtggaaaattaaagtgtgtcattctt |
315 |
Q |
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| T |
3663832 |
gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaaaatttgtcattctt |
3663748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 9259610 - 9259566
Alignment:
| Q |
227 |
taaggatggaagtcttgttggttggcgactcatccaaaaaattcg |
271 |
Q |
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| T |
9259610 |
taaggatggaagtgttgttggttggcgtctcattcaagaaattcg |
9259566 |
T |
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