View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_13 (Length: 308)
Name: NF6595_low_13
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5376527 - 5376234
Alignment:
| Q |
1 |
acaaatcccaaaaaagaaacaaacggctgaaacgctcctattttcagattaacttaaataacaagaaaacttcagacatacaatacaatgcaaacctcaa |
100 |
Q |
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| T |
5376527 |
acaaatcccaaaaaagaaacaaacggctgaaacgctcctattttcagattaacttaaataacaagaaaacttcagacatacaatacaatgcaaacctcaa |
5376428 |
T |
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| Q |
101 |
aaa--ttcaacataatatgtataataactaaacaaaattaatcccttggttctttctcttaatttccaatttcaaatcactcctttatttttatccattc |
198 |
Q |
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| T |
5376427 |
aaaaattcaacataatatgtataataactaaacaaaattaatcccttggttctttctcttaatttccaatttcaaatcactcctttatttttatccattc |
5376328 |
T |
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| Q |
199 |
caaagttggagtaactatcccttttctggctttctactgcagctttttgggttctaatttgtaccacaactgatgtaccatgtaacacagtttg |
292 |
Q |
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| T |
5376327 |
caaagttggagtaactatcccttttctggctttctactgcagctttttgggttctaatttgtaccagaactgatgtaccatgtaacacagtttg |
5376234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 5370677 - 5370620
Alignment:
| Q |
40 |
attttcagattaacttaaataacaagaaaacttcagacatacaatacaatgcaaacct |
97 |
Q |
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||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
5370677 |
attttcaaattaactgaaataacaagaaaacaccagacctacaatacaatgcacacct |
5370620 |
T |
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