View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6595_low_18 (Length: 245)

Name: NF6595_low_18
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6595_low_18
NF6595_low_18
[»] chr4 (10 HSPs)
chr4 (1-115)||(35306832-35306946)
chr4 (1-94)||(43632772-43632865)
chr4 (1-115)||(44804342-44804458)
chr4 (12-88)||(17509217-17509293)
chr4 (12-88)||(43725019-43725095)
chr4 (12-88)||(45048496-45048572)
chr4 (11-94)||(21063849-21063932)
chr4 (42-88)||(45048411-45048457)
chr4 (58-115)||(36518535-36518592)
chr4 (1-35)||(42605963-42605997)
[»] chr2 (10 HSPs)
chr2 (1-115)||(4199360-4199474)
chr2 (3-115)||(7087968-7088080)
chr2 (8-115)||(8289012-8289119)
chr2 (1-94)||(31667975-31668068)
chr2 (9-90)||(13587614-13587695)
chr2 (9-90)||(13587842-13587923)
chr2 (12-88)||(32868885-32868961)
chr2 (12-88)||(32869070-32869146)
chr2 (12-88)||(32868796-32868872)
chr2 (49-94)||(16261904-16261949)
[»] chr6 (4 HSPs)
chr6 (1-115)||(7684804-7684918)
chr6 (1-115)||(31157377-31157491)
chr6 (12-88)||(32696318-32696394)
chr6 (12-50)||(12994951-12994989)
[»] chr8 (5 HSPs)
chr8 (15-115)||(40844055-40844155)
chr8 (12-88)||(7827406-7827482)
chr8 (12-88)||(7829785-7829861)
chr8 (23-115)||(24953886-24953977)
chr8 (8-94)||(33111369-33111455)
[»] chr7 (8 HSPs)
chr7 (3-94)||(26404047-26404138)
chr7 (25-115)||(46890496-46890586)
chr7 (8-94)||(43655138-43655224)
chr7 (9-90)||(28346794-28346875)
chr7 (12-88)||(40755061-40755137)
chr7 (12-88)||(40756694-40756770)
chr7 (1-42)||(27251711-27251752)
chr7 (12-90)||(36902808-36902886)
[»] chr3 (12 HSPs)
chr3 (8-115)||(51799264-51799370)
chr3 (25-115)||(49081694-49081784)
chr3 (1-93)||(21179411-21179503)
chr3 (1-94)||(49003683-49003776)
chr3 (12-88)||(30891842-30891918)
chr3 (12-88)||(30895335-30895411)
chr3 (12-88)||(47096695-47096771)
chr3 (12-88)||(21170967-21171043)
chr3 (12-88)||(53136704-53136780)
chr3 (12-88)||(53142635-53142711)
chr3 (52-97)||(49082020-49082065)
chr3 (47-88)||(47094911-47094952)
[»] chr5 (16 HSPs)
chr5 (1-111)||(33405932-33406042)
chr5 (1-94)||(5896267-5896360)
chr5 (1-90)||(25062018-25062107)
chr5 (1-90)||(25084425-25084514)
chr5 (1-90)||(25142395-25142484)
chr5 (2-94)||(2496863-2496955)
chr5 (12-88)||(5629197-5629273)
chr5 (12-88)||(20881177-20881253)
chr5 (12-88)||(27822489-27822565)
chr5 (12-88)||(5625693-5625769)
chr5 (12-88)||(20875298-20875374)
chr5 (12-88)||(42825811-42825887)
chr5 (9-88)||(27819966-27820045)
chr5 (1-94)||(28472705-28472798)
chr5 (47-90)||(41556499-41556542)
chr5 (12-88)||(42830790-42830857)
[»] scaffold0027 (1 HSPs)
scaffold0027 (12-88)||(55610-55686)
[»] chr1 (3 HSPs)
chr1 (12-88)||(48344551-48344627)
chr1 (12-88)||(48350418-48350494)
chr1 (12-87)||(45728814-45728895)
[»] scaffold0360 (1 HSPs)
scaffold0360 (12-88)||(10430-10506)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 35306832 - 35306946
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  35306832 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcataaatggtttctgcggagaaagtagtttttgtttttgttttt 35306931  T
Q  101 atttcttatgaataa 115  Q
    |||||||||||||||    
T  35306932 atttcttatgaataa 35306946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43632772 - 43632865
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43632772 ccgtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttttttttt 43632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 44804342 - 44804458
Alignment:
Q  1 ccgtacaaaataaaaaaga--taaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttg 98  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  44804342 ccgtacgaaataaaaaataaataaattatgtgctacgggaggtcatagtttacattggcgtaaatgatttccgcggagaaagtagtttttgtttttgttt 44804441  T
Q  99 ttatttcttatgaataa 115  Q
    ||||||||||| |||||    
T  44804442 ttatttcttataaataa 44804458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 17509217 - 17509293
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17509217 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 17509293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 43725019 - 43725095
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43725019 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 43725095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 45048496 - 45048572
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45048496 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 45048572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 21063849 - 21063932
Alignment:
Q  11 taaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |   | |||||||||| |||||||||||    
T  21063849 taaaaaagataaattatgtgctacgggaggtcataatttacattggcgtaaatggatgatgtggagaaagtaatttttgttttt 21063932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 45048457 - 45048411
Alignment:
Q  42 catagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  45048457 catagtttacattggcgtaattgatttccgcggagaaagtagttttt 45048411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 36518535 - 36518592
Alignment:
Q  58 gtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttcttatgaataa 115  Q
    |||||||||||||| ||||||| |||||||||||||| ||  ||||||||||||||||    
T  36518535 gtaaatggtttccgaggagaaaatagtttttgtttttatttctatttcttatgaataa 36518592  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42605997 - 42605963
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  42605997 ccgtacgaaataaaaaagataaattatgtgctacg 42605963  T

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Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4199474 - 4199360
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgtt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  4199474 ccgtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgtttttgttttt 4199375  T
Q  101 atttcttatgaataa 115  Q
    |||||||||||||||    
T  4199374 atttcttatgaataa 4199360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 7087968 - 7088080
Alignment:
Q  3 gtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttat 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  7087968 gtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtgtttgtttttat 7088067  T
Q  103 ttcttatgaataa 115  Q
    |||||||||||||    
T  7088068 ttcttatgaataa 7088080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 8289119 - 8289012
Alignment:
Q  8 aaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttctt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8289119 aaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgaggagaaagtagtttttgtttttgtttttatttctt 8289020  T
Q  108 atgaataa 115  Q
    ||||||||    
T  8289019 atgaataa 8289012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 31668068 - 31667975
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31668068 ccgtacgaaataaaaaagataaattatgtgttacgggaggtcatagtttacattggcgtaaatggtttccgcagagaaagtagtttttgttttt 31667975  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 13587695 - 13587614
Alignment:
Q  9 aataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13587695 aataaaaaagataaattatatgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgt 13587614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 13587842 - 13587923
Alignment:
Q  9 aataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13587842 aataaaaacgataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgt 13587923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 32868885 - 32868961
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32868885 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 32868961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 32869070 - 32869146
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32869070 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 32869146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 32868872 - 32868796
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||    
T  32868872 aaaaaagataaattatgtgctacgggaggacatagtttacattggcgtaattgatttccgcggagaaagtagttttt 32868796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 16261949 - 16261904
Alignment:
Q  49 tacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    ||||||||||||||||| |  || ||||||||||||||||||||||    
T  16261949 tacattggcgtaaatggatgtcgtggagaaagtagtttttgttttt 16261904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7684918 - 7684804
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgtt 100  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  7684918 ccgtacgaaataaaaaagataaattatgtgctatgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtatttgttttt 7684819  T
Q  101 atttcttatgaataa 115  Q
    |||||||||||||||    
T  7684818 atttcttatgaataa 7684804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 31157377 - 31157491
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgtt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||    
T  31157377 ccgtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgtggagaaagttgtttttgtttttgttttt 31157476  T
Q  101 atttcttatgaataa 115  Q
    || ||||||||||||    
T  31157477 atctcttatgaataa 31157491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 32696394 - 32696318
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32696394 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 32696318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 12994951 - 12994989
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagttta 50  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  12994951 aaaaaagataaattatgtgctacgggaagtcataattta 12994989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 40844155 - 40844055
Alignment:
Q  15 aaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttcttatgaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  40844155 aaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggaaaaagtagtttttgtttttgtttttatttcttatgaata 40844056  T
Q  115 a 115  Q
    |    
T  40844055 a 40844055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 7827482 - 7827406
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7827482 aaaaaaaataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 7827406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 7829785 - 7829861
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  7829785 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattgatttccgcggagaaagtagttttt 7829861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 24953886 - 24953977
Alignment:
Q  23 attatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttcttatgaataa 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |||| |||||||||||||||||    
T  24953886 attatgtgctacgggagatcatagtttacattggc-taaatggtttccgcagagaaagtagtttttatttctgtttttatttcttatgaataa 24953977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 33111369 - 33111455
Alignment:
Q  8 aaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | || | |||||||||||||||||||||    
T  33111369 aaataaaaaagataaattatgtgttacgggaggtcatagattacattggcgtaaatggatgccacagagaaagtagtttttgttttt 33111455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 26404138 - 26404047
Alignment:
Q  3 gtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26404138 gtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 26404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 46890586 - 46890496
Alignment:
Q  25 tatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttcttatgaataa 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46890586 tatgtgctacgggaggtcatagtttacattggcataaatggtttccgcggagaaagtagtttttgtttttgtttttatttcttatgaataa 46890496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 43655138 - 43655224
Alignment:
Q  8 aaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  43655138 aaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggaaaaagtagtttttgttttt 43655224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28346875 - 28346794
Alignment:
Q  9 aataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28346875 aataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgt 28346794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 40755137 - 40755061
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40755137 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 40755061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 40756694 - 40756770
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40756694 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 40756770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27251752 - 27251711
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtc 42  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  27251752 ccgtacgaaataaaaaagataaattatgtgctacgggaggtc 27251711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 36902808 - 36902886
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    |||||||||||||| | ||||||||||  ||||| |||| |||||||||| ||| |   ||||||||||||||||||||    
T  36902808 aaaaaagataaattttctgctacgggacatcataatttaaattggcgtaattggatagggcggagaaagtagtttttgt 36902886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 51799264 - 51799370
Alignment:
Q  8 aaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttctt 107  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  51799264 aaataaaaaagataaattatgtgcta-gagaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtatttgtttttatttctt 51799362  T
Q  108 atgaataa 115  Q
    ||||||||    
T  51799363 atgaataa 51799370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 49081784 - 49081694
Alignment:
Q  25 tatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgttatttcttatgaataa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  49081784 tatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcgaagaaagtagtttttgtttttgtttttatttcttatgaataa 49081694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21179503 - 21179411
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttt 93  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  21179503 ccgtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttttttt 21179411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 49003776 - 49003683
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  49003776 ccgtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatgattttcgcggagaaagtagtttttattttt 49003683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 30891918 - 30891842
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30891918 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 30891842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 30895335 - 30895411
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30895335 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 30895411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 47096695 - 47096771
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47096695 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 47096771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 21171043 - 21170967
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21171043 aaaaaagataaattatgtgctacgggaggtcatagtttgcattggcgtaattggtttccgcggagaaagtagttttt 21170967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 53136780 - 53136704
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  53136780 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattgatttccgcggagaaagtagttttt 53136704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 53142635 - 53142711
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  53142635 aaaaaagataaattatgtgctacgggaggtcataggttatattggcgtaattggtttccgcggagaaagtagttttt 53142711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 49082020 - 49082065
Alignment:
Q  52 attggcgtaaatggtttccgcggagaaagtagtttttgtttttgtt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49082020 attggcgtaaatggtttccgcggagaaagtagtttttgtttttgtt 49082065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 47094952 - 47094911
Alignment:
Q  47 tttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  47094952 tttacattggcgtaattggtttccgcggagaaagtagttttt 47094911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33405932 - 33406042
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgtttttgttgtt 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||    
T  33405932 ccgtacgaaataaaacagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccggggaaaaagtagtttttatttttgttttt 33406031  T
Q  101 atttcttatga 111  Q
    |||||||||||    
T  33406032 atttcttatga 33406042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5896360 - 5896267
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5896360 ccgtacgaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgttttt 5896267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25062018 - 25062107
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25062018 ccgtacagaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgt 25062107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25084425 - 25084514
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25084425 ccgtacagaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgt 25084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25142395 - 25142484
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25142395 ccgtacagaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagtttttgt 25142484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 2496863 - 2496955
Alignment:
Q  2 cgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2496863 cgtacgaaataaaaaagataaaatatgtgctacaggaggtcatagtttacattggcgtaaatggttgccgcggagaaagtagtttttgttttt 2496955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 5629197 - 5629273
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5629197 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 5629273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 20881177 - 20881253
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20881177 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 20881253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 27822489 - 27822565
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27822489 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 27822565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 5625769 - 5625693
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  5625769 aaaaaagataaattatgtgctacgggaggtcatagtttgcattggcgtaattggtttccgcggagaaagtagttttt 5625693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 20875374 - 20875298
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20875374 aaaaaaaataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 20875298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 42825887 - 42825811
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  42825887 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgtggagaaagtagttttt 42825811  T

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Target: chr5; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 27820045 - 27819966
Alignment:
Q  9 aataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  27820045 aataaaaaagataaattatgtgctacgggtggtcatagtttacattggcgtaattggttttcacggagaaagtagttttt 27819966  T

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Target: chr5; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28472705 - 28472798
Alignment:
Q  1 ccgtacaaaataaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagtttttgttttt 94  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   | ||||||||||||||||||||||    
T  28472705 ccgtacgaactaaaaaagataaattatgtgctacgggaggttatagtttacattggcgtaaatggatgttgtggagaaagtagtttttgttttt 28472798  T

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Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 41556499 - 41556542
Alignment:
Q  47 tttacattggcgtaaatggtttccgcggagaaagtagtttttgt 90  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  41556499 tttacattggcgtaattggtttccgcggagaaagtagtttttgt 41556542  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 42830790 - 42830857
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    ||||||||||||||||||||||||||         ||||||||||| ||| |||||||| |||||||||||||||||    
T  42830790 aaaaaagataaattatgtgctacggg---------tttacattggcataattggtttccacggagaaagtagttttt 42830857  T

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Target: scaffold0027 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 55686 - 55610
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55686 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 55610  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 48344627 - 48344551
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48344627 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 48344551  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 48350418 - 48350494
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48350418 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattggtttccgcggagaaagtagttttt 48350494  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 45728895 - 45728814
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttaca------ttggcgtaaatggtttccgcggagaaagtagtttt 87  Q
    ||||||||||||||||||||||||||| |||||| |||| |      ||||||||||||| | ||||||||||| |||||||    
T  45728895 aaaaaagataaattatgtgctacgggaagtcataatttaaatttaggttggcgtaaatggataccgcggagaaaatagtttt 45728814  T

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Target: scaffold0360 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 10430 - 10506
Alignment:
Q  12 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaaatggtttccgcggagaaagtagttttt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  10430 aaaaaagataaattatgtgctacgggaggtcatagtttacattggcgtaattgatttctgcggagaaagtagttttt 10506  T

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