View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_19 (Length: 241)
Name: NF6595_low_19
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 10945981 - 10945746
Alignment:
| Q |
5 |
ttctcactcgaaccatacatgcaataagaatatgaaatgttgaacaccaatactgctaatttgaattaaaagtttgtttttcacacaaattcattgttat |
104 |
Q |
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| T |
10945981 |
ttctcactcgaaccatacatgcaataagaatatgaaatgttgaacaccaatactgctaatttgaattaaaagtttgtttttcacacaaattcattgttat |
10945882 |
T |
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| Q |
105 |
gtgtccaggatttgtggttgtattgtttatgccacnnnnnnnnacaaaagattatacaccgtagaagtttcattttgtagtgcttgtttccaaaatcgct |
204 |
Q |
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| T |
10945881 |
gtgtccaggatttgtggttgtattgtttatgccac-tttttttacaaaagattatacactgtagaagtttcattttgtagtgcttgtttccaaaatcgct |
10945783 |
T |
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| Q |
205 |
atttaaagcctctgcagacttctacagggcttattat |
241 |
Q |
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| T |
10945782 |
atttaaagcctctgcagacttctacagggcttattat |
10945746 |
T |
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