View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_2 (Length: 586)
Name: NF6595_low_2
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 29375776 - 29375215
Alignment:
| Q |
18 |
gtaacaatgtaagagatttgtcatgagacaatatagaagttgttggcatcggtaatgagttgggttgtttttcttcagcatgttgagttgagtgtgacac |
117 |
Q |
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| T |
29375776 |
gtaacaatgtaacagatttgtcaagagacaatatagaagttgttggcatcggtaatgagttggcttgtttttcttcagcatgttgagttgagtgtgacac |
29375677 |
T |
|
| Q |
118 |
attggtggatgagttgttgaataggccagttgtggcaattgggacactgaattgatcttgtggtatctgatataggacatctctgaggaactcttcatca |
217 |
Q |
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| T |
29375676 |
attggtggatgagttgttgaataggcccgttgtggcaatagggacactaaattgatcttgtggtgtctgatataggatatctctgaggaactcttcatca |
29375577 |
T |
|
| Q |
218 |
aatgtgttgttggtgtgacacaaacattcttccatttcctaagaacaaatcatttgtaaaatcaaaattaatcaagtgtaagtttttatagttagtggag |
317 |
Q |
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| T |
29375576 |
aatgtgttgttggtgtgacacaaacattcttccatttcctaagagcaattcatttgtaaaatcataattaatcaagtgtcagtttttatagttagaggag |
29375477 |
T |
|
| Q |
318 |
gagttcatacaatgatctatatatgcataaaatatcatcacatttcaattaagaatataaatatacaatgtataatatgacttgttattgtattaccaaa |
417 |
Q |
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| T |
29375476 |
gagttcatacaattatctatatatgcataaaatatcatcacatttcaattaagaatataaatatacaatgtataatatgacttgttattgtattaccaaa |
29375377 |
T |
|
| Q |
418 |
tcgtaagaccaattcccccacggattctcctccattatttgaattaggatatcaagctatcatgccctacctt-aattctgcttgaaggatagagatgag |
516 |
Q |
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| T |
29375376 |
tcgtaagaccaattcccccatggattctcctccattatttgaattaggatatcaagctatcatgccctaccttaaattctgcttgaaggatagagatgag |
29375277 |
T |
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| Q |
517 |
aacttatggtttaggtgtgtcttcttggagactcaagt--actaaatttataaatgatgatg |
576 |
Q |
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| T |
29375276 |
aacttatggtttaggtgtgtcttcttggagactcaagtacactaaatttataaatgatgatg |
29375215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 110 - 473
Target Start/End: Complemental strand, 45039048 - 45038682
Alignment:
| Q |
110 |
tgtgacacattggtggatgagttgttgaataggccagttgtggcaattgggacactgaattgatcttgtggtatctgatataggacatctctgaggaact |
209 |
Q |
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|||||||||||| ||||||||||||| | |||| ||||||||||||| || ||| |||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
45039048 |
tgtgacacattgatggatgagttgtttactaggtcagttgtggcaataggaacattgaattgatcttgtggaatctgatacaggatatctctgaggaact |
45038949 |
T |
|
| Q |
210 |
cttcatcaaatgtgttgttggtgtgacacaaacattcttccatttcctaagaacaaatcatttgtaaaatcaaaattaatcaagtgtaagtttttatagt |
309 |
Q |
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| T |
45038948 |
cttcgtcaaatgtgttgtttgtgtgacacaaatgttcttccatttcctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttataga |
45038849 |
T |
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| Q |
310 |
tagtggaggagttcatacaatgatctatatatgcataaaatatcatcaca--tttcaattaagaatataaatatacaatgtataatatgacttgtt-att |
406 |
Q |
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| T |
45038848 |
tagtggaggagttcatacaatgatctatatatacataaaatatcatcatattttttaattaagaatataaatatacaatgtataatatgacttgttgttt |
45038749 |
T |
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| Q |
407 |
gtattaccaaatcgtaagaccaattcccccacggattctcctccattatttgaattaggatatcaag |
473 |
Q |
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| T |
45038748 |
gtactaccaaatcataagaccaattgccccatggattctcctccattattttgattaggatatcaag |
45038682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 86 - 357
Target Start/End: Complemental strand, 45064699 - 45064429
Alignment:
| Q |
86 |
ttttcttcagcatgttgagttgagtgtgacacattggtggatgagttgttgaataggccagttgtggcaattgggacactgaattgatcttgtggtatct |
185 |
Q |
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||||||| ||||||||||||||| ||||||||| || | ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||| |
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| T |
45064699 |
ttttctttagcatgttgagttgaatgtgacacaatgatcgatgagttgttgactaggccagctgtggcaatagggacactgaattgatcttgtggtgtct |
45064600 |
T |
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| Q |
186 |
gatataggacatctctgaggaactcttcatcaaatgtgttgttggtgtgacacaaacattcttccatttcctaagaacaaatcatttgtaaaatcaaaat |
285 |
Q |
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| T |
45064599 |
gattcatgatatcctttaggaactcttcatcaaatatgttattggggtgacttaaacattcttccattttctaagaacgaataatttgtaaaacaataac |
45064500 |
T |
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| Q |
286 |
taatcaagtgtaagtttttatagttagtggaggagttcatacaatgatctatatatgcataaaatatcatca |
357 |
Q |
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| T |
45064499 |
taatcaagtggtagtttttatagatagt-gatgagttcatacaatgatctatatatacataaagtatcatca |
45064429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 168 - 463
Target Start/End: Original strand, 45083625 - 45083943
Alignment:
| Q |
168 |
attgatcttgtggtatctgatataggacatctctgaggaactcttcatcaaatgtgttgttggtgtgacacaaacattcttccatttcctaagaacaaat |
267 |
Q |
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|||||||||||||| |||||| |||| ||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| |
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| T |
45083625 |
attgatcttgtggtgtctgattcaggatatccttgaggaactcttcatcaaatatgttgtttgtgtgacttaaacattcttccatttcctaagaatgaat |
45083724 |
T |
|
| Q |
268 |
catttgtaaaatcaaaattaatcaagtgtaagtttttatagttagtggaggagttca---taca---atgatctatatatgca---taaaatatcatcac |
358 |
Q |
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| T |
45083725 |
aatttgtaaaacaataattaatcaagtggtggtttttatagttagtggaggagttcacagttcatacatgatctatatatacatattattatatcatcat |
45083824 |
T |
|
| Q |
359 |
atttcaattaagaatataaatataca--------------atgtataatatgacttgttattgtattaccaaatcgtaagaccaattcccccacggattc |
444 |
Q |
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| T |
45083825 |
attgtaagtaagaatataaatatacagtttataatatatcatatatgatatgacttgttattgtattaccaattggtaagaccaattcccccatgaattc |
45083924 |
T |
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| Q |
445 |
tcctccattatttgaatta |
463 |
Q |
| |
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|||||||||||||| |||| |
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| T |
45083925 |
tcctccattatttggatta |
45083943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 473
Target Start/End: Complemental strand, 45064307 - 45064241
Alignment:
| Q |
408 |
tattaccaaatcgtaagaccaattcccccacggattctcctccattattt-gaattaggatatcaag |
473 |
Q |
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||||||| |||| ||||||||||| |||| ||||||||||||||||||| | |||||||||||||| |
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| T |
45064307 |
tattaccgaatcataagaccaattgtcccatggattctcctccattatttgggattaggatatcaag |
45064241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 45083548 - 45083626
Alignment:
| Q |
49 |
tatagaagttgttggcatcggtaatgagttgggttgtttttcttcagcatgttgagttgagtgtgacacattggtggat |
127 |
Q |
| |
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|||| |||||||||| || ||||||||| ||| | |||||| |||||||||||||||| |||||||||||| ||||| |
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| T |
45083548 |
tatataagttgttggtattggtaatgagctggttaacttttctgcagcatgttgagttgaatgtgacacattgatggat |
45083626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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