View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_20 (Length: 239)
Name: NF6595_low_20
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48308856 - 48308635
Alignment:
| Q |
1 |
ttcttcctgcacttgaacttatgctaagcctcaaaggtcacaattcttcatttttatttatcgcatgcgcatgtttgctctatctaaacttagtcttaag |
100 |
Q |
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| T |
48308856 |
ttcttccttcacttgaacttatgctaagcctcaaaggtcacaattcttcatttttatttatcgcatgcgcatgtttgctctatctaaacttagtcttaag |
48308757 |
T |
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| Q |
101 |
aaggccacatgtttacgatattatttgaatttgaattgaagagggtcgggaagttaagccacggaactcctctctccattttagttttgagtttacactc |
200 |
Q |
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| T |
48308756 |
a-ggccacatgtttacgatattatttgaatttgaattgaagagggtcgggaagttaggccacggaactcctctctccattttagttttgagtttacactc |
48308658 |
T |
|
| Q |
201 |
aaacagatttgggtcatataact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
48308657 |
aaacagatttgggtcatataact |
48308635 |
T |
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