View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6595_low_6 (Length: 422)
Name: NF6595_low_6
Description: NF6595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6595_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 648445 - 648835
Alignment:
| Q |
19 |
aaatgttttaggtttttcaatttaatcaagcttagtatctcaaaaaatatggatataaaggagagatttatattgattgtactgcttaaagatagtaata |
118 |
Q |
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| T |
648445 |
aaatgttttaggtttttcaatttaatcaagcttagtatctcaaaaaatatggatataaaggagagatttatattgattgtactgcttaaagatagtaata |
648544 |
T |
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| Q |
119 |
gacgatgcaatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaat |
218 |
Q |
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| T |
648545 |
gacgatgcaatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaat |
648644 |
T |
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| Q |
219 |
tacacccagtatttaaacattgctagcttttgctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactc |
318 |
Q |
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| T |
648645 |
tacacccagtatttaaacattgctagcttttgttctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactc |
648744 |
T |
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| Q |
319 |
acactttcagtgactttcaatctaattgcaccatgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttc |
409 |
Q |
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| T |
648745 |
acactttcagtgactttcaatctaattgcaccatgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttc |
648835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 127 - 408
Target Start/End: Original strand, 685955 - 686231
Alignment:
| Q |
127 |
aatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacaccca |
226 |
Q |
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| T |
685955 |
aatccaaacataaaaacatgaacattttctcaa--ccaaaaacaagtcctaaaatttcagttatgctaaaacataatagaacttttataaattacaccca |
686052 |
T |
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| Q |
227 |
gtatttaaacattgctagcttttgctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttc |
326 |
Q |
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|| || ||||||||||||||||| ||| |||||||||| |||||| || |||| | ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
686053 |
gttttcaaacattgctagctttttttcttaataaatgaatatttgt-ttgaacaga-tagacttttaaattttaaaatatt-aatcacactcacactttc |
686149 |
T |
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| Q |
327 |
agtgactttcaatctaattgcaccatgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggactt |
408 |
Q |
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| T |
686150 |
agtgactttcaatctagttgtatcataccttttatggtttatctgtttgcatattcaactgccgtctcttgattatggactt |
686231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 685620 - 685706
Alignment:
| Q |
43 |
atcaagcttagtatctcaaaaaatatggatataaag-gagagatttatattgattgtactgcttaaagatagtaatagacgatgcaat |
129 |
Q |
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||||||||| ||||||||||||||||||||| |||| |||||||| | | | ||||||||| | | |||||| ||||| ||||||||| |
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| T |
685620 |
atcaagcttcgtatctcaaaaaatatggatacaaagagagagattga-aataattgtactgatcatagatagcaataggcgatgcaat |
685706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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