View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6596_high_10 (Length: 234)

Name: NF6596_high_10
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6596_high_10
NF6596_high_10
[»] chr6 (27 HSPs)
chr6 (1-215)||(26850680-26850894)
chr6 (52-197)||(26825856-26825997)
chr6 (7-180)||(26863654-26863827)
chr6 (115-188)||(26979441-26979514)
chr6 (25-180)||(26951824-26951978)
chr6 (55-204)||(27663208-27663350)
chr6 (106-197)||(27602754-27602847)
chr6 (104-191)||(25547013-25547099)
chr6 (124-191)||(26144900-26144967)
chr6 (1-71)||(27696526-27696596)
chr6 (1-91)||(28794544-28794634)
chr6 (106-191)||(25485094-25485178)
chr6 (106-191)||(26057952-26058036)
chr6 (106-191)||(26077922-26078006)
chr6 (1-35)||(26058098-26058132)
chr6 (1-35)||(26078068-26078102)
chr6 (1-91)||(26648617-26648707)
chr6 (1-91)||(26754585-26754675)
chr6 (115-197)||(26961112-26961194)
chr6 (1-91)||(28788423-28788513)
chr6 (124-189)||(25512924-25512989)
chr6 (123-195)||(26625266-26625341)
chr6 (121-197)||(26658012-26658091)
chr6 (123-195)||(26731243-26731318)
chr6 (121-197)||(26763983-26764062)
chr6 (109-149)||(26637646-26637686)
chr6 (109-149)||(26743612-26743652)
[»] chr1 (4 HSPs)
chr1 (52-179)||(28130717-28130840)
chr1 (1-191)||(28125628-28125817)
chr1 (107-178)||(26137990-26138061)
chr1 (155-204)||(266452-266504)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-91)||(9670-9760)
[»] scaffold1870 (1 HSPs)
scaffold1870 (1-88)||(954-1041)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-88)||(2626-2713)
scaffold0277 (1-91)||(11589-11679)
[»] chr2 (1 HSPs)
chr2 (121-180)||(17991274-17991333)
[»] chr8 (1 HSPs)
chr8 (121-195)||(22023269-22023346)
[»] chr4 (5 HSPs)
chr4 (121-169)||(18653604-18653652)
chr4 (121-169)||(18677686-18677734)
chr4 (121-169)||(18697528-18697576)
chr4 (121-169)||(18722200-18722248)
chr4 (121-169)||(18729622-18729670)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26850894 - 26850680
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26850894 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagaca 26850795  T
Q  101 ctatatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagactccgaagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26850794 ctatatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagactccgaagtaa 26850695  T
Q  201 atccactccattcca 215  Q
    |||||||||||||||    
T  26850694 atccactccattcca 26850680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 26825997 - 26825856
Alignment:
Q  52 gaacttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaaatttataaatatacacaattggaaaattat 151  Q
    ||||||||||||||||||||||||  |||||||   ||||||||| |||| |||    ||||  |||| |||||||||||||||||||||||||||| |     
T  26825997 gaacttctgcataaacacaaagaaaaaacaaac---taaaaataaaacacaata----atctagtagtgaatttataaatatacacaattggaaaatgaa 26825905  T
Q  152 gttatttcacttgccttgttcgaaaaac---atgatagagactccgaag 197  Q
     |||||||||||||||||||| ||| ||   |||||||||| |||||||    
T  26825904 cttatttcacttgccttgttcaaaatactagatgatagagaatccgaag 26825856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 26863827 - 26863654
Alignment:
Q  7 ggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatat 106  Q
    ||||||||||| | ||  ||||||| |||||  ||| || || | ||||||||||||||||||||||||  |||||| | ||||| | ||   |  | ||    
T  26863827 ggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaagaaacaaaaacataaataaaaattagaaaat 26863728  T
Q  107 ataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaaca 180  Q
    ||| ||| ||||| |||||||||||||||||||||||||||| |  |||| ||||||||||||||| |||||||    
T  26863727 atactctcatagtgaatttataaatatacacaattggaaaatgaaattatatcacttgccttgttcaaaaaaca 26863654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 26979514 - 26979441
Alignment:
Q  115 atagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagag 188  Q
    ||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| || ||| |||||||||    
T  26979514 atagtgaatttataaatatacacaattggaaaattaaactatttcacttgccttgtttgataaaaatgatagag 26979441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 26951978 - 26951824
Alignment:
Q  25 gtccaatgtcaagtttttaatgttgttgaacttct---gcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaa 121  Q
    ||||||||||||| |||| ||||||||||||||||   |||| || ||| | ||  |||||||||||||| || ||||||||||  |    ||||||| |    
T  26951978 gtccaatgtcaagattttcatgttgttgaacttcttctgcattaatacatataagaaacaaacaaataaatatcagacactatactt----ttatagtga 26951883  T
Q  122 atttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaaca 180  Q
    |||||||||  |||| ||||||||| | |  |||||||| || ||||||||||||||||    
T  26951882 atttataaaattacataattggaaactgaaattatttcatttaccttgttcgaaaaaca 26951824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 27663208 - 27663350
Alignment:
Q  55 cttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaaatttataaatatacacaattggaaaattatgtt 154  Q
    ||||||||||||||| |  ||  ||||||||||||||||| |||||||||||||          | ||||||||||||||||||||||||||||    ||    
T  27663208 cttctgcataaacaccataaagaaacaaacaaataaaaatcagacactatatat----------tgaatttataaatatacacaattggaaaatacaatt 27663297  T
Q  155 atttcacttgccttgttcgaaaaac---atgatagagactccgaagtaaatcc 204  Q
    |||| ||||||||||   |||||||   ||||||||| |||||||||||||||    
T  27663298 attttacttgccttgaatgaaaaacaaaatgatagaggctccgaagtaaatcc 27663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27602754 - 27602847
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaa---aacatgatagagactccgaag 197  Q
    |||||||| ||||| |||| ||||||||||||||||| ||||| |  |||||||||||||||||||| |||   || |||||||||||| |||||    
T  27602754 tataatctaatagtgaatt-ataaatatacacaattgaaaaatgaatttatttcacttgccttgttcaaaatacaagatgatagagacttcgaag 27602847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 25547099 - 25547013
Alignment:
Q  104 tatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| |  ||||||||||||||||| |||||| ||| ||| ||||||    
T  25547099 tatataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagatggagact 25547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 26144967 - 26144900
Alignment:
Q  124 ttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||| |||||||||||||| ||||| |  ||||||||||||||||| |||||| ||| ||||||||||    
T  26144967 ttatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagatagagact 26144900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27696526 - 27696596
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaa 71  Q
    |||||| |||||||||| | || |||||||||||||| |||| || || | ||||||||||||||||||||    
T  27696526 tatatgtgttaaatattcacaatcgtccaatgtcaagattttcatattctggaacttctgcataaacacaa 27696596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28794634 - 28794544
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | |   |||||||||||||  ||| ||||| | |||||||||||||||||||| |||  |||||| |||||||    
T  28794634 tatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaacttctgcataaacacaaggaagaaacaaataaataaa 28794544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 25485178 - 25485094
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |  ||||||||||||||||| |||||| ||| || |||||||    
T  25485178 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagaaagagact 25485094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 26058036 - 26057952
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |   |||||||||||||||| |||||| ||| ||||||||||    
T  26058036 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacctatttcacttgccttgctcgaaatacaagatagagact 26057952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 26078006 - 26077922
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |   |||||||||||||||| |||||| ||| ||||||||||    
T  26078006 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacctatttcacttgccttgctcgaaatacaagatagagact 26077922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26058132 - 26058098
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtca 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  26058132 tatatgggttaaatattgagaaccgtccaatgtca 26058098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26078102 - 26078068
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtca 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  26078102 tatatgggttaaatattgagaaccgtccaatgtca 26078068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 26648707 - 26648617
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    |||||| |||||||||| | ||| || ||||||||||  ||| || || | |||||||||||||||||||| |||  |||||| |||||||    
T  26648707 tatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaacaaacaaataaataaa 26648617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 26754675 - 26754585
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    |||||| |||||||||| | ||| || ||||||||||  ||| || || | |||||||||||||||||||| |||  |||||| |||||||    
T  26754675 tatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaacaaacaaataaataaa 26754585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 26961194 - 26961112
Alignment:
Q  115 atagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagactccgaag 197  Q
    ||||| |||||||||||||||||||||||| ||| |   ||||||||| ||||| ||||| ||| |||| |||| || |||||    
T  26961194 atagtgaatttataaatatacacaattggagaatgaaactatttcactcgccttattcgacaaaaatgaaagagtcttcgaag 26961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28788513 - 28788423
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | |   |||||||||||||  ||| ||||| | ||| |||||||||||||||| |||  |||||| |||||||    
T  28788513 tatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaaattctgcataaacacaaggaagaaacaaataaataaa 28788423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 25512989 - 25512924
Alignment:
Q  124 ttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagaga 189  Q
    |||| |||||||||||||| ||||| |  ||||||||||||||||| || ||| ||| ||||||||    
T  25512989 ttatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagatagaga 25512924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 26625341 - 26625266
Alignment:
Q  123 tttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagactccga 195  Q
    |||||||||||| |||||| |||||| |  | |||||||||||||||||| ||||||    |||||||||||||||    
T  26625341 tttataaatatatacaattagaaaatgaaatcatttcacttgccttgttcaaaaaactagctgatagagactccga 26625266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 26658091 - 26658012
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaa---aacatgatagagactccgaag 197  Q
    ||||||||||||||||| || | ||||| |  ||||||||||||||||||| ||||   || |||||||||||| |||||    
T  26658091 aatttataaatatacacgatcgaaaaatgaacttatttcacttgccttgtttgaaatacaagatgatagagacttcgaag 26658012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 26731318 - 26731243
Alignment:
Q  123 tttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagactccga 195  Q
    |||||||||||| |||||| |||||| |  | |||||||||||||||||| ||||||    |||||||||||||||    
T  26731318 tttataaatatatacaattagaaaatgaaatcatttcacttgccttgttcaaaaaactagctgatagagactccga 26731243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 26764062 - 26763983
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaa---aacatgatagagactccgaag 197  Q
    ||||||||||||||||| || | ||||| |  ||||||||||||||||||| ||||   || |||||||||||| |||||    
T  26764062 aatttataaatatacacgatcgaaaaatgaacttatttcacttgccttgtttgaaatacaagatgatagagacttcgaag 26763983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 26637686 - 26637646
Alignment:
Q  109 aatcttatagtaaatttataaatatacacaattggaaaatt 149  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  26637686 aatctaatagtgaatttataaatatgcacaattggaaaatt 26637646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 26743652 - 26743612
Alignment:
Q  109 aatcttatagtaaatttataaatatacacaattggaaaatt 149  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  26743652 aatctaatagtgaatttataaatatgcacaattggaaaatt 26743612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 28130717 - 28130840
Alignment:
Q  52 gaacttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaaatttataaatatacacaattggaaaattat 151  Q
    ||||||||||||||||||||||||  |||||| |||||||||||  ||||||||    |||| || || |||| | ||||||||||||||||||||| |     
T  28130717 gaacttctgcataaacacaaagaagaaacaaaaaaataaaaatagaacactata----atctaatggtgaattcaaaaatatacacaattggaaaatgaa 28130812  T
Q  152 gttatttcacttgccttgttcgaaaaac 179  Q
     |||||||||||||||||||| ||||||    
T  28130813 cttatttcacttgccttgttcaaaaaac 28130840  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28125628 - 28125817
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagaca 100  Q
    ||||||||||||||||| | ||  || ||| ||||||  ||| || || | ||||||||||||||||||||||||  ||||||  | | ||||||| |||    
T  28125628 tatatgggttaaatattcacaaaagttcaaagtcaagactttcatattctcgaacttctgcataaacacaaagaagaaacaaaatattcaaaataaaaca 28125727  T
Q  101 ctatatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagact 191  Q
    |     ||||||| ||||| |||| |||||||||||||||| |||||| |  |||||||||||||||||||| ||||||   ||||||||||||    
T  28125728 c----aataatctaatagtgaattcataaatatacacaatttgaaaatgaacttatttcacttgccttgttcaaaaaactagatgatagagact 28125817  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 26138061 - 26137990
Alignment:
Q  107 ataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaa 178  Q
    ||||||| ||||| |||||||||||||||  |||||||||||    |||||||||| ||||||||| |||||    
T  26138061 ataatctcatagttaatttataaatataccaaattggaaaatgtgcttatttcactcgccttgttcaaaaaa 26137990  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 266452 - 266504
Alignment:
Q  155 atttcacttgccttgttcgaaaaac---atgatagagactccgaagtaaatcc 204  Q
    |||||||||||||||||||||||||   ||||||  |||||||||||||||||    
T  266452 atttcacttgccttgttcgaaaaacaagatgataatgactccgaagtaaatcc 266504  T

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Target: scaffold0419 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9760 - 9670
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | | | ||||||||||||| |||| ||||| | |||||||||||||||||||| |||  |||||| |||||||    
T  9760 tatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaagaaacaaataaataaa 9670  T

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Target: scaffold1870 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1041 - 954
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaat 88  Q
    ||||||||||||||||| | | | ||||||||||||| |||| ||||| | |||||||||||||||||||| |||  |||||| ||||    
T  1041 tatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaagaaacaaataaat 954  T

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Target: scaffold0277 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2626 - 2713
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaat 88  Q
    ||||||||||||||||| | | | ||||||||||||| |||| ||||| | |||||||||||||||||||| |||  |||||| ||||    
T  2626 tatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaagaaacaaataaat 2713  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11589 - 11679
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | |   |||||||||||||  ||| ||||| | ||| |||||||||||||||| |||  |||||| |||||||    
T  11589 tatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaaattctgcataaacacaaggaagaaacaaataaataaa 11679  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 17991274 - 17991333
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaaca 180  Q
    |||||||||||||||||||||  ||||| |  |||||||||||||||| |||||||||||    
T  17991274 aatttataaatatacacaattccaaaatgaaattatttcacttgccttattcgaaaaaca 17991333  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 22023346 - 22023269
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagactccga 195  Q
    |||||||||||||| |||||| |||| | | |||||||||||||||||| || ||| ||   ||||||||||||||||    
T  22023346 aatttataaatatatacaattagaaagtgaagttatttcacttgccttgctcaaaatactagatgatagagactccga 22023269  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18653604 - 18653652
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18653604 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18653652  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18677686 - 18677734
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18677686 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18677734  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18697528 - 18697576
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18697528 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18697576  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18722200 - 18722248
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18722200 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18722248  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18729622 - 18729670
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18729622 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18729670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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