View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6596_high_2 (Length: 629)

Name: NF6596_high_2
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6596_high_2
NF6596_high_2
[»] chr8 (1 HSPs)
chr8 (1-629)||(32614446-32615074)


Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 32614446 - 32615074
Alignment:
Q  1 ttgaagtctttgcaactgcatcgcggctaaaattgagatcacattaaccacatttttgcaatatctaagattcaatattagaacgaccgtaacatcaact 100  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32614446 ttgaagtctttgcaactgtatcgcgactaatattgagatcacattaaccacatttttgcaatatctaagattcaatattagagcgaccgtaacatcaact 32614545  T
Q  101 taaaccaatgaggaataagagataaaggatcttaaaaatcatattagaattaatggttggttaattaccttcttggttgccataagttcttgctcaagag 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614546 taaaccaatgagcaataagagataaaggatcttaaaaatcatattagaattaatggttggttaattaccttcttggttgccataagttcttgctcaagag 32614645  T
Q  201 catcagcgcgacttatagcagcattaagcatttcttccttctcaggtggcatgcaagtggttgtgttcatgttgcccattttatcttccaactcagccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614646 catcagcgcgacttatagcagcattaagcatttcttccttctcaggtggcatgcaagtggttgtgttcatgttgcccattttatcttccaactcagccat 32614745  T
Q  301 gcgcttcataacagtcataaactcttgagccgaaatggtagggttggtcaattggtcattagagtcttcagttttaaagtcaccaccagagtaaacagaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614746 gcgcttcataacagtcataaactcttgagccgaaatggtagggttggtcaattggtcattagagtcttcagttttaaagtcaccaccagagtaaacagaa 32614845  T
Q  401 tttgagtagaagttggcatcagtgagcctcttcggcatgtttcgtgtcattctcaccatggttatgagtcccatcacaaaggccatcatgccggtgaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614846 tttgagtagaagttggcatcagtgagcctcttcggcatgtttcgtgtcattctcaccatggttatgagtcccatcacaaaggccatcatgccggtgaaaa 32614945  T
Q  501 tctgtgagttcactttttcgtgaatcttgcacgaatcaggcaccgtcaaagcttctacttcagctgtcaaacggatcgcaaaaacacatacagtttagtt 600  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32614946 tctgtgagttcactttttcgtgaatcttgcatgaatcaggcaccgtcaaagcttctacttcagctgtcaaacggatcgcaaaaacacatacagttcagtt 32615045  T
Q  601 cacaaaacgaagtaatgttcaaaatatta 629  Q
    |||||||||||||||||||||||||||||    
T  32615046 cacaaaacgaagtaatgttcaaaatatta 32615074  T

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