View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6596_high_4 (Length: 448)

Name: NF6596_high_4
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6596_high_4
NF6596_high_4
[»] chr6 (1 HSPs)
chr6 (362-444)||(13493908-13493990)
[»] chr5 (1 HSPs)
chr5 (353-448)||(15401304-15401399)
[»] chr7 (3 HSPs)
chr7 (362-446)||(36721425-36721509)
chr7 (362-415)||(23670326-23670379)
chr7 (362-448)||(9568045-9568131)
[»] chr1 (7 HSPs)
chr1 (91-349)||(2901840-2902098)
chr1 (371-448)||(27925773-27925850)
chr1 (92-181)||(10532769-10532858)
chr1 (107-149)||(44758656-44758698)
chr1 (362-448)||(44758949-44759035)
chr1 (395-448)||(52841940-52841993)
chr1 (115-179)||(52842932-52842996)
[»] scaffold0154 (1 HSPs)
scaffold0154 (362-432)||(17016-17086)
[»] chr4 (2 HSPs)
chr4 (96-183)||(46625981-46626068)
chr4 (394-448)||(26893455-26893509)
[»] chr2 (1 HSPs)
chr2 (371-448)||(37089272-37089349)
[»] chr3 (1 HSPs)
chr3 (392-444)||(29085647-29085699)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 13493908 - 13493990
Alignment:
Q  362 agtttattgtctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagt 444  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13493908 agtttattgtctacttgtaggactgtactctcatctaatgctaattatactctagcttttattaggagacaagctaatagagt 13493990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 448
Target Start/End: Original strand, 15401304 - 15401399
Alignment:
Q  353 ctcaacaacagtttattgtctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    |||||||||||||||||| ||||||||||| || | || ||||||||| ||||| || ||||||| ||||||||||||||| ||||||||||||||    
T  15401304 ctcaacaacagtttattggctaattgtagggctgtgctttcatctaatactagtcatgctctagcttttattaggagacaatctaatagagtcgct 15401399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 36721425 - 36721509
Alignment:
Q  362 agtttattgtctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagtcg 446  Q
    |||||| | ||||||||| || || ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  36721425 agtttactctctaattgttggtctatactctcatctaatgctagttatactctagcttttattaggagacaaattaatagagtcg 36721509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 23670326 - 23670379
Alignment:
Q  362 agtttattgtctaattgtaggactctactctcatctaatgctagttatactcta 415  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  23670326 agtttactgtctaattgtaggaatctactctcatctaatgctagttatactcta 23670379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 448
Target Start/End: Original strand, 9568045 - 9568131
Alignment:
Q  362 agtttattgtctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    |||||||| ||||||| ||||||| | || |  ||||||||||||||| ||||| | | | |||||||||||||||| | |||||||    
T  9568045 agtttattctctaattataggactttgcttttgtctaatgctagttatgctctaacttatgttaggagacaagctaacatagtcgct 9568131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 91 - 349
Target Start/End: Original strand, 2901840 - 2902098
Alignment:
Q  91 cttctcaacatgacaatctcccagcttttcaatccaacaaccaacactttaaattgtgagttgattgcttccatcgtgaacacacaagatacacctaaca 190  Q
    ||||||||||||||  |||| || ||||||||||||||||||| ||||| |||| | || || |||||||| ||| |||||||||||||||||  | | |    
T  2901840 cttctcaacatgactgtctctcaacttttcaatccaacaaccagcacttgaaatcgagactttattgcttctatcatgaacacacaagatacatttgata 2901939  T
Q  191 tatgtaagttaactcttgattctcgagctaaatctgatacagtcatttggaatacatctccaaatggagcatatacggtcaaatcaacctataagatgtg 290  Q
    | ||||||||| || |  | |||||| || | ||||||||| | ||||||||  ||||||| |||||  |||| ||  |||||||  |||| ||||||||    
T  2901940 tttgtaagttacctttgcactctcgaactcattctgatacaattatttggaacgcatctcccaatggctcatacacaatcaaatcttcctacaagatgtg 2902039  T
Q  291 tttgaatctttccgatcacaggtcgcactttcatgttactggtgactgaaagttgatat 349  Q
    || || | |||| || || ||| |  ||| ||||||  ||||||| || ||||||||||    
T  2902040 ttcgagtatttcggaccaaaggacaaactatcatgtctctggtgattggaagttgatat 2902098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 27925773 - 27925850
Alignment:
Q  371 tctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    ||||||||||||||  |||| | |||||||  ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  27925773 tctaattgtaggacgttacttttatctaatcttagttatgctctagcttatattaggagacaagctaatagagtcgct 27925850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 10532858 - 10532769
Alignment:
Q  92 ttctcaacatgacaatctcccagcttttcaatccaacaaccaacactttaaattgtgagttgattgcttccatcgtgaacacacaagata 181  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||  ||| | || || |||||||| ||| |||||||| ||||||    
T  10532858 ttctcaacatgattgtctctcaacttttcaatccaacaaccaacacttggaatcgagactttattgcttctatcatgaacacataagata 10532769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 44758656 - 44758698
Alignment:
Q  107 tctcccagcttttcaatccaacaaccaacactttaaattgtga 149  Q
    |||| |||||||||||||||||||||||||||| |||| ||||    
T  44758656 tctctcagcttttcaatccaacaaccaacacttgaaatcgtga 44758698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 448
Target Start/End: Original strand, 44758949 - 44759035
Alignment:
Q  362 agtttattgtctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    |||||| | ||||||||||||||| | || | ||||||| |||||||| ||||||| | ||||| |||| ||| ||||| |||||||    
T  44758949 agtttactctctaattgtaggactttgcttttatctaatactagttatgctctagcttatattaagagataaggtaatatagtcgct 44759035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 52841993 - 52841940
Alignment:
Q  395 tctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    |||||||||| |||| ||||||  | | ||||||||||||||||||||||||||    
T  52841993 tctaatgctacttatgctctagattatgttaggagacaagctaatagagtcgct 52841940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 52842996 - 52842932
Alignment:
Q  115 cttttcaatccaacaaccaacactttaaattgtgagttgattgcttccatcgtgaacacacaaga 179  Q
    |||||||||||||||||||||||||  ||| |||| || ||| |||| ||  |||||||||||||    
T  52842996 cttttcaatccaacaaccaacacttggaatcgtgactttattacttctataatgaacacacaaga 52842932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 17016 - 17086
Alignment:
Q  362 agtttattgtctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagaca 432  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  17016 agtttactgtctacttgtatgactctactctcatctaatgttagttatactctagcttttattacgagaca 17086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 46626068 - 46625981
Alignment:
Q  96 caacatgacaatctcccagcttttcaatccaacaaccaacactttaaattgtgagttgattgcttccatcgtgaacacacaagataca 183  Q
    |||||||||  |||||||||||||||| ||||||||||||||||  ||||| || || |||||||| ||| ||||||| |||||||||    
T  46626068 caacatgactgtctcccagcttttcaacccaacaaccaacacttggaattgagactttattgcttctatcatgaacacgcaagataca 46625981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 26893509 - 26893455
Alignment:
Q  394 atctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    |||||||||||||| | ||||||| | |||||||||||||||||||| |||||||    
T  26893509 atctaatgctagttgtgctctagcttatattaggagacaagctaatatagtcgct 26893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 37089272 - 37089349
Alignment:
Q  371 tctaattgtaggactctactctcatctaatgctagttatactctagcatttattaggagacaagctaatagagtcgct 448  Q
    ||||||||||||||| |||||  ||||||||||||||||  ||  || | |||||| |||||||||||||||||||||    
T  37089272 tctaattgtaggactttactcatatctaatgctagttatgatccggcttatattagaagacaagctaatagagtcgct 37089349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 29085699 - 29085647
Alignment:
Q  392 tcatctaatgctagttatactctagcatttattaggagacaagctaatagagt 444  Q
    |||||||||| ||||||   |||||| | ||||||||||||||||||||||||    
T  29085699 tcatctaatgttagttacgttctagcttatattaggagacaagctaatagagt 29085647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University