View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6596_high_9 (Length: 239)
Name: NF6596_high_9
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6596_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 9333245 - 9333452
Alignment:
| Q |
8 |
ccaagaaaatggaattgaagacagttagattttgcagaattttttgctccttaaattttcggtaacttcatttttattatgagaaccaagacatatatcg |
107 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||| |||| |
|
|
| T |
9333245 |
ccaacaaagtggaattgaggacagttagattttgcagaattttttggtccttaaattttctgcaacttcatt-------------ccaagacataaatcg |
9333331 |
T |
|
| Q |
108 |
taaaaattaaaaactttgtctaaccccaaaacctt-aagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaaagaacttggtctgat |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9333332 |
taaaaattaaaaactctgtctaaccccaaaacctttaagcacctcacacagtagaatcttagtcatgtgttttttaagaagttaaagaacttggtctgat |
9333431 |
T |
|
| Q |
207 |
ccgattaagaagaggacttgg |
227 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
9333432 |
ccgtttaagaaaaggacttgg |
9333452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 30562083 - 30562290
Alignment:
| Q |
8 |
ccaagaaaatggaattgaagacagttagattttgcagaattttttgctccttaaattttcggtaacttcatttttattatgagaaccaagacatatatcg |
107 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||| |||| |
|
|
| T |
30562083 |
ccaacaaagtggaattgaggacagttagattttgcagaattttttggtccttaaattttctgcaacttcatt-------------ccaagacataaatcg |
30562169 |
T |
|
| Q |
108 |
taaaaattaaaaactttgtctaaccccaaaacctt-aagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaaagaacttggtctgat |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30562170 |
taaaaattaaaaactctgtctaaccccaaaacctttaagcacctcacacagtagaatcttagtcatgtgttttttaagaagttaaagaacttggtctgat |
30562269 |
T |
|
| Q |
207 |
ccgattaagaagaggacttgg |
227 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
30562270 |
ccgtttaagaaaaggacttgg |
30562290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 54901876 - 54902083
Alignment:
| Q |
8 |
ccaagaaaatggaattgaagacagttagattttgcagaattttttgctccttaaattttcggtaacttcatttttattatgagaaccaagacatatatcg |
107 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||| |||| |
|
|
| T |
54901876 |
ccaacaaagtggaattgaggacagttagattttgcagaattttttggtccttaaattttctgcaacttcatt-------------ccaagacataaatcg |
54901962 |
T |
|
| Q |
108 |
taaaaattaaaaactttgtctaaccccaaaacctt-aagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaaagaacttggtctgat |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54901963 |
taaaaattaaaaactctgtctaaccccaaaacctttaagcacctcacacagtagaatcttagtcatgtgttttttaagaagttaaagaacttggtctgat |
54902062 |
T |
|
| Q |
207 |
ccgattaagaagaggacttgg |
227 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
54902063 |
ccgtttaagaaaaggacttgg |
54902083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 540265 - 540366
Alignment:
| Q |
126 |
tctaaccccaaaaccttaagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaaagaacttggtctgatccgattaagaagaggactt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
540265 |
tctaaccccaaaaccttaagcacctcacacactagaatcttagtcatgtgttttttaagaagttaaagaacttgatctgatccgtttaagaaaaggactt |
540364 |
T |
|
| Q |
226 |
gg |
227 |
Q |
| |
|
|| |
|
|
| T |
540365 |
gg |
540366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 540218 - 540266
Alignment:
| Q |
8 |
ccaagaaaatggaattgaagacagttagattttgcagaattttttgctc |
56 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
540218 |
ccaacaaagtggaattgaagacagatagattttgcagaattttttgctc |
540266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University