View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6596_low_12 (Length: 234)

Name: NF6596_low_12
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6596_low_12
NF6596_low_12
[»] chr6 (27 HSPs)
chr6 (1-215)||(26850680-26850894)
chr6 (52-197)||(26825856-26825997)
chr6 (7-180)||(26863654-26863827)
chr6 (115-188)||(26979441-26979514)
chr6 (25-180)||(26951824-26951978)
chr6 (55-204)||(27663208-27663350)
chr6 (106-197)||(27602754-27602847)
chr6 (104-191)||(25547013-25547099)
chr6 (124-191)||(26144900-26144967)
chr6 (1-71)||(27696526-27696596)
chr6 (1-91)||(28794544-28794634)
chr6 (106-191)||(25485094-25485178)
chr6 (106-191)||(26057952-26058036)
chr6 (106-191)||(26077922-26078006)
chr6 (1-35)||(26058098-26058132)
chr6 (1-35)||(26078068-26078102)
chr6 (1-91)||(26648617-26648707)
chr6 (1-91)||(26754585-26754675)
chr6 (115-197)||(26961112-26961194)
chr6 (1-91)||(28788423-28788513)
chr6 (124-189)||(25512924-25512989)
chr6 (123-195)||(26625266-26625341)
chr6 (121-197)||(26658012-26658091)
chr6 (123-195)||(26731243-26731318)
chr6 (121-197)||(26763983-26764062)
chr6 (109-149)||(26637646-26637686)
chr6 (109-149)||(26743612-26743652)
[»] chr1 (4 HSPs)
chr1 (52-179)||(28130717-28130840)
chr1 (1-191)||(28125628-28125817)
chr1 (107-178)||(26137990-26138061)
chr1 (155-204)||(266452-266504)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-91)||(9670-9760)
[»] scaffold1870 (1 HSPs)
scaffold1870 (1-88)||(954-1041)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-88)||(2626-2713)
scaffold0277 (1-91)||(11589-11679)
[»] chr2 (1 HSPs)
chr2 (121-180)||(17991274-17991333)
[»] chr8 (1 HSPs)
chr8 (121-195)||(22023269-22023346)
[»] chr4 (5 HSPs)
chr4 (121-169)||(18653604-18653652)
chr4 (121-169)||(18677686-18677734)
chr4 (121-169)||(18697528-18697576)
chr4 (121-169)||(18722200-18722248)
chr4 (121-169)||(18729622-18729670)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26850894 - 26850680
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26850894 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagaca 26850795  T
Q  101 ctatatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagactccgaagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26850794 ctatatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagactccgaagtaa 26850695  T
Q  201 atccactccattcca 215  Q
    |||||||||||||||    
T  26850694 atccactccattcca 26850680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 26825997 - 26825856
Alignment:
Q  52 gaacttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaaatttataaatatacacaattggaaaattat 151  Q
    ||||||||||||||||||||||||  |||||||   ||||||||| |||| |||    ||||  |||| |||||||||||||||||||||||||||| |     
T  26825997 gaacttctgcataaacacaaagaaaaaacaaac---taaaaataaaacacaata----atctagtagtgaatttataaatatacacaattggaaaatgaa 26825905  T
Q  152 gttatttcacttgccttgttcgaaaaac---atgatagagactccgaag 197  Q
     |||||||||||||||||||| ||| ||   |||||||||| |||||||    
T  26825904 cttatttcacttgccttgttcaaaatactagatgatagagaatccgaag 26825856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 26863827 - 26863654
Alignment:
Q  7 ggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatat 106  Q
    ||||||||||| | ||  ||||||| |||||  ||| || || | ||||||||||||||||||||||||  |||||| | ||||| | ||   |  | ||    
T  26863827 ggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaagaaacaaaaacataaataaaaattagaaaat 26863728  T
Q  107 ataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaaca 180  Q
    ||| ||| ||||| |||||||||||||||||||||||||||| |  |||| ||||||||||||||| |||||||    
T  26863727 atactctcatagtgaatttataaatatacacaattggaaaatgaaattatatcacttgccttgttcaaaaaaca 26863654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 26979514 - 26979441
Alignment:
Q  115 atagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagag 188  Q
    ||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| || ||| |||||||||    
T  26979514 atagtgaatttataaatatacacaattggaaaattaaactatttcacttgccttgtttgataaaaatgatagag 26979441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 26951978 - 26951824
Alignment:
Q  25 gtccaatgtcaagtttttaatgttgttgaacttct---gcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaa 121  Q
    ||||||||||||| |||| ||||||||||||||||   |||| || ||| | ||  |||||||||||||| || ||||||||||  |    ||||||| |    
T  26951978 gtccaatgtcaagattttcatgttgttgaacttcttctgcattaatacatataagaaacaaacaaataaatatcagacactatactt----ttatagtga 26951883  T
Q  122 atttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaaca 180  Q
    |||||||||  |||| ||||||||| | |  |||||||| || ||||||||||||||||    
T  26951882 atttataaaattacataattggaaactgaaattatttcatttaccttgttcgaaaaaca 26951824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 27663208 - 27663350
Alignment:
Q  55 cttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaaatttataaatatacacaattggaaaattatgtt 154  Q
    ||||||||||||||| |  ||  ||||||||||||||||| |||||||||||||          | ||||||||||||||||||||||||||||    ||    
T  27663208 cttctgcataaacaccataaagaaacaaacaaataaaaatcagacactatatat----------tgaatttataaatatacacaattggaaaatacaatt 27663297  T
Q  155 atttcacttgccttgttcgaaaaac---atgatagagactccgaagtaaatcc 204  Q
    |||| ||||||||||   |||||||   ||||||||| |||||||||||||||    
T  27663298 attttacttgccttgaatgaaaaacaaaatgatagaggctccgaagtaaatcc 27663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27602754 - 27602847
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaa---aacatgatagagactccgaag 197  Q
    |||||||| ||||| |||| ||||||||||||||||| ||||| |  |||||||||||||||||||| |||   || |||||||||||| |||||    
T  27602754 tataatctaatagtgaatt-ataaatatacacaattgaaaaatgaatttatttcacttgccttgttcaaaatacaagatgatagagacttcgaag 27602847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 25547099 - 25547013
Alignment:
Q  104 tatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| |  ||||||||||||||||| |||||| ||| ||| ||||||    
T  25547099 tatataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagatggagact 25547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 26144967 - 26144900
Alignment:
Q  124 ttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||| |||||||||||||| ||||| |  ||||||||||||||||| |||||| ||| ||||||||||    
T  26144967 ttatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagatagagact 26144900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27696526 - 27696596
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaa 71  Q
    |||||| |||||||||| | || |||||||||||||| |||| || || | ||||||||||||||||||||    
T  27696526 tatatgtgttaaatattcacaatcgtccaatgtcaagattttcatattctggaacttctgcataaacacaa 27696596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28794634 - 28794544
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | |   |||||||||||||  ||| ||||| | |||||||||||||||||||| |||  |||||| |||||||    
T  28794634 tatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaacttctgcataaacacaaggaagaaacaaataaataaa 28794544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 25485178 - 25485094
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |  ||||||||||||||||| |||||| ||| || |||||||    
T  25485178 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagaaagagact 25485094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 26058036 - 26057952
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |   |||||||||||||||| |||||| ||| ||||||||||    
T  26058036 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacctatttcacttgccttgctcgaaatacaagatagagact 26057952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 26078006 - 26077922
Alignment:
Q  106 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 191  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |   |||||||||||||||| |||||| ||| ||||||||||    
T  26078006 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacctatttcacttgccttgctcgaaatacaagatagagact 26077922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26058132 - 26058098
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtca 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  26058132 tatatgggttaaatattgagaaccgtccaatgtca 26058098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26078102 - 26078068
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtca 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  26078102 tatatgggttaaatattgagaaccgtccaatgtca 26078068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 26648707 - 26648617
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    |||||| |||||||||| | ||| || ||||||||||  ||| || || | |||||||||||||||||||| |||  |||||| |||||||    
T  26648707 tatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaacaaacaaataaataaa 26648617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 26754675 - 26754585
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    |||||| |||||||||| | ||| || ||||||||||  ||| || || | |||||||||||||||||||| |||  |||||| |||||||    
T  26754675 tatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaacaaacaaataaataaa 26754585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 26961194 - 26961112
Alignment:
Q  115 atagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagactccgaag 197  Q
    ||||| |||||||||||||||||||||||| ||| |   ||||||||| ||||| ||||| ||| |||| |||| || |||||    
T  26961194 atagtgaatttataaatatacacaattggagaatgaaactatttcactcgccttattcgacaaaaatgaaagagtcttcgaag 26961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28788513 - 28788423
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | |   |||||||||||||  ||| ||||| | ||| |||||||||||||||| |||  |||||| |||||||    
T  28788513 tatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaaattctgcataaacacaaggaagaaacaaataaataaa 28788423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 25512989 - 25512924
Alignment:
Q  124 ttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagaga 189  Q
    |||| |||||||||||||| ||||| |  ||||||||||||||||| || ||| ||| ||||||||    
T  25512989 ttatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagatagaga 25512924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 26625341 - 26625266
Alignment:
Q  123 tttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagactccga 195  Q
    |||||||||||| |||||| |||||| |  | |||||||||||||||||| ||||||    |||||||||||||||    
T  26625341 tttataaatatatacaattagaaaatgaaatcatttcacttgccttgttcaaaaaactagctgatagagactccga 26625266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 26658091 - 26658012
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaa---aacatgatagagactccgaag 197  Q
    ||||||||||||||||| || | ||||| |  ||||||||||||||||||| ||||   || |||||||||||| |||||    
T  26658091 aatttataaatatacacgatcgaaaaatgaacttatttcacttgccttgtttgaaatacaagatgatagagacttcgaag 26658012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 26731318 - 26731243
Alignment:
Q  123 tttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagactccga 195  Q
    |||||||||||| |||||| |||||| |  | |||||||||||||||||| ||||||    |||||||||||||||    
T  26731318 tttataaatatatacaattagaaaatgaaatcatttcacttgccttgttcaaaaaactagctgatagagactccga 26731243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 26764062 - 26763983
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaa---aacatgatagagactccgaag 197  Q
    ||||||||||||||||| || | ||||| |  ||||||||||||||||||| ||||   || |||||||||||| |||||    
T  26764062 aatttataaatatacacgatcgaaaaatgaacttatttcacttgccttgtttgaaatacaagatgatagagacttcgaag 26763983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 26637686 - 26637646
Alignment:
Q  109 aatcttatagtaaatttataaatatacacaattggaaaatt 149  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  26637686 aatctaatagtgaatttataaatatgcacaattggaaaatt 26637646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 26743652 - 26743612
Alignment:
Q  109 aatcttatagtaaatttataaatatacacaattggaaaatt 149  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  26743652 aatctaatagtgaatttataaatatgcacaattggaaaatt 26743612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 28130717 - 28130840
Alignment:
Q  52 gaacttctgcataaacacaaagaatgaacaaacaaataaaaataagacactatatataatcttatagtaaatttataaatatacacaattggaaaattat 151  Q
    ||||||||||||||||||||||||  |||||| |||||||||||  ||||||||    |||| || || |||| | ||||||||||||||||||||| |     
T  28130717 gaacttctgcataaacacaaagaagaaacaaaaaaataaaaatagaacactata----atctaatggtgaattcaaaaatatacacaattggaaaatgaa 28130812  T
Q  152 gttatttcacttgccttgttcgaaaaac 179  Q
     |||||||||||||||||||| ||||||    
T  28130813 cttatttcacttgccttgttcaaaaaac 28130840  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28125628 - 28125817
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaaaataagaca 100  Q
    ||||||||||||||||| | ||  || ||| ||||||  ||| || || | ||||||||||||||||||||||||  ||||||  | | ||||||| |||    
T  28125628 tatatgggttaaatattcacaaaagttcaaagtcaagactttcatattctcgaacttctgcataaacacaaagaagaaacaaaatattcaaaataaaaca 28125727  T
Q  101 ctatatataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagact 191  Q
    |     ||||||| ||||| |||| |||||||||||||||| |||||| |  |||||||||||||||||||| ||||||   ||||||||||||    
T  28125728 c----aataatctaatagtgaattcataaatatacacaatttgaaaatgaacttatttcacttgccttgttcaaaaaactagatgatagagact 28125817  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 26138061 - 26137990
Alignment:
Q  107 ataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaa 178  Q
    ||||||| ||||| |||||||||||||||  |||||||||||    |||||||||| ||||||||| |||||    
T  26138061 ataatctcatagttaatttataaatataccaaattggaaaatgtgcttatttcactcgccttgttcaaaaaa 26137990  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 266452 - 266504
Alignment:
Q  155 atttcacttgccttgttcgaaaaac---atgatagagactccgaagtaaatcc 204  Q
    |||||||||||||||||||||||||   ||||||  |||||||||||||||||    
T  266452 atttcacttgccttgttcgaaaaacaagatgataatgactccgaagtaaatcc 266504  T

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Target: scaffold0419 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9760 - 9670
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | | | ||||||||||||| |||| ||||| | |||||||||||||||||||| |||  |||||| |||||||    
T  9760 tatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaagaaacaaataaataaa 9670  T

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Target: scaffold1870 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1041 - 954
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaat 88  Q
    ||||||||||||||||| | | | ||||||||||||| |||| ||||| | |||||||||||||||||||| |||  |||||| ||||    
T  1041 tatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaagaaacaaataaat 954  T

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Target: scaffold0277 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2626 - 2713
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaat 88  Q
    ||||||||||||||||| | | | ||||||||||||| |||| ||||| | |||||||||||||||||||| |||  |||||| ||||    
T  2626 tatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaagaaacaaataaat 2713  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11589 - 11679
Alignment:
Q  1 tatatgggttaaatatttagaaccgtccaatgtcaagtttttaatgttgttgaacttctgcataaacacaaagaatgaacaaacaaataaa 91  Q
    ||||||||||||||||| | |   |||||||||||||  ||| ||||| | ||| |||||||||||||||| |||  |||||| |||||||    
T  11589 tatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaaattctgcataaacacaaggaagaaacaaataaataaa 11679  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 17991274 - 17991333
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaaca 180  Q
    |||||||||||||||||||||  ||||| |  |||||||||||||||| |||||||||||    
T  17991274 aatttataaatatacacaattccaaaatgaaattatttcacttgccttattcgaaaaaca 17991333  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 22023346 - 22023269
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaac---atgatagagactccga 195  Q
    |||||||||||||| |||||| |||| | | |||||||||||||||||| || ||| ||   ||||||||||||||||    
T  22023346 aatttataaatatatacaattagaaagtgaagttatttcacttgccttgctcaaaatactagatgatagagactccga 22023269  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18653604 - 18653652
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18653604 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18653652  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18677686 - 18677734
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18677686 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18677734  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18697528 - 18697576
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18697528 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18697576  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18722200 - 18722248
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18722200 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18722248  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18729622 - 18729670
Alignment:
Q  121 aatttataaatatacacaattggaaaattatgttatttcacttgccttg 169  Q
    |||||||||||||| |||||| |||||| |  |||||||||||||||||    
T  18729622 aatttataaatatatacaattagaaaatgaaattatttcacttgccttg 18729670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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