View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6596_low_2 (Length: 629)

Name: NF6596_low_2
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6596_low_2
NF6596_low_2
[»] chr8 (1 HSPs)
chr8 (1-629)||(32614446-32615074)


Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 32614446 - 32615074
Alignment:
Q  1 ttgaagtctttgcaactgcatcgcggctaaaattgagatcacattaaccacatttttgcaatatctaagattcaatattagaacgaccgtaacatcaact 100  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32614446 ttgaagtctttgcaactgtatcgcgactaatattgagatcacattaaccacatttttgcaatatctaagattcaatattagagcgaccgtaacatcaact 32614545  T
Q  101 taaaccaatgaggaataagagataaaggatcttaaaaatcatattagaattaatggttggttaattaccttcttggttgccataagttcttgctcaagag 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614546 taaaccaatgagcaataagagataaaggatcttaaaaatcatattagaattaatggttggttaattaccttcttggttgccataagttcttgctcaagag 32614645  T
Q  201 catcagcgcgacttatagcagcattaagcatttcttccttctcaggtggcatgcaagtggttgtgttcatgttgcccattttatcttccaactcagccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614646 catcagcgcgacttatagcagcattaagcatttcttccttctcaggtggcatgcaagtggttgtgttcatgttgcccattttatcttccaactcagccat 32614745  T
Q  301 gcgcttcataacagtcataaactcttgagccgaaatggtagggttggtcaattggtcattagagtcttcagttttaaagtcaccaccagagtaaacagaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614746 gcgcttcataacagtcataaactcttgagccgaaatggtagggttggtcaattggtcattagagtcttcagttttaaagtcaccaccagagtaaacagaa 32614845  T
Q  401 tttgagtagaagttggcatcagtgagcctcttcggcatgtttcgtgtcattctcaccatggttatgagtcccatcacaaaggccatcatgccggtgaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614846 tttgagtagaagttggcatcagtgagcctcttcggcatgtttcgtgtcattctcaccatggttatgagtcccatcacaaaggccatcatgccggtgaaaa 32614945  T
Q  501 tctgtgagttcactttttcgtgaatcttgcacgaatcaggcaccgtcaaagcttctacttcagctgtcaaacggatcgcaaaaacacatacagtttagtt 600  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32614946 tctgtgagttcactttttcgtgaatcttgcatgaatcaggcaccgtcaaagcttctacttcagctgtcaaacggatcgcaaaaacacatacagttcagtt 32615045  T
Q  601 cacaaaacgaagtaatgttcaaaatatta 629  Q
    |||||||||||||||||||||||||||||    
T  32615046 cacaaaacgaagtaatgttcaaaatatta 32615074  T

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