View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6596_low_3 (Length: 588)
Name: NF6596_low_3
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6596_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 79 - 399
Target Start/End: Complemental strand, 540893 - 540571
Alignment:
| Q |
79 |
aaacaattttgaaacattggatactagggaattgtcctgtccctgtccttgccaatttatttaacgtttgcattgctgtctgtctgcatatatacaattg |
178 |
Q |
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| T |
540893 |
aaacaatttttaaacattggataccagggaattgtcctgtccctgtccttgccaatttatttaacgtttgcattgctgtctgtctgcatatatacaattg |
540794 |
T |
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| Q |
179 |
tgcctcagagacttgtttctttcctctattagtaacctcttctctctct--atttcaaaagtgaatagtgccattcttcgatggaaatcatagagggagt |
276 |
Q |
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| T |
540793 |
tgcctcagagacttgtttctttcctctattagtaacctcttctctctctctatttcaaaagtgaatagtgccattcttcaatggaaatcatagtgggagt |
540694 |
T |
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| Q |
277 |
agtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaaaattgatcatagctaccaaa |
376 |
Q |
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| T |
540693 |
agtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaaaattaatcatagctaccaaa |
540594 |
T |
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| Q |
377 |
ttgtcggacaatggaaaccccca |
399 |
Q |
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| T |
540593 |
ttgtcggacaatggaaaccccca |
540571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 540466 - 540397
Alignment:
| Q |
511 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcatctc |
580 |
Q |
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| T |
540466 |
aaggtccagctgtggtccttctaatatgacctgttatagctagtagtagatgcagttccatgttcttctc |
540397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 542962 - 542919
Alignment:
| Q |
38 |
ctgtagagtaattacttggctcaccagaaattaaacaaccaaaa |
81 |
Q |
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| T |
542962 |
ctgtagagtaattacttggctcaccagaaattaaacaaccaaaa |
542919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 28824022 - 28823953
Alignment:
| Q |
511 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcatctc |
580 |
Q |
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| T |
28824022 |
aaggtccaactgtggtccttctaatatgacctgttatagcccgtggtagatgcagttccatgttcttctc |
28823953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 30562390 - 30562321
Alignment:
| Q |
511 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcatctc |
580 |
Q |
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| T |
30562390 |
aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctc |
30562321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 54902183 - 54902114
Alignment:
| Q |
511 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcatctc |
580 |
Q |
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| T |
54902183 |
aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctc |
54902114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 9333540 - 9333483
Alignment:
| Q |
523 |
tggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcatctc |
580 |
Q |
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| T |
9333540 |
tggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctc |
9333483 |
T |
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