View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6596_low_8 (Length: 299)
Name: NF6596_low_8
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6596_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 32614196 - 32614458
Alignment:
| Q |
18 |
aaacagatacttcatatttgaacattattttcatgatatagtaaaaagatctgtatagtttagtgaatcatagttttaaatttggatttggtgtatttac |
117 |
Q |
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| T |
32614196 |
aaacagatacttcatatttgaacattattttcatgatatcgtaaaaagatctgtatagtttagtgaatcatagttttaaatttggatttggtgtatttac |
32614295 |
T |
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| Q |
118 |
tacgccaaacataatttaatatgactatctgatctcaaatctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaatttgatttgtc |
217 |
Q |
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| T |
32614296 |
tacgccaaa---aatttaatatgactatctg-------atctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaatttgatttgtc |
32614385 |
T |
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| Q |
218 |
tgatttcaaattaatggccgatatcgtttactaagtgtaaacaagtgcttttaaagaattttgaagcctttgc |
290 |
Q |
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| T |
32614386 |
cgatgtcaaattaatggccgatatagtttaccaagtgtaaacaagtgcttttaaagaattttgaagtctttgc |
32614458 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 30241592 - 30241519
Alignment:
| Q |
173 |
gagatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaatggccgatatcgttta |
247 |
Q |
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| T |
30241592 |
gagatcgtttaaagttg-ttttgttattgtgtaatctgagatgtctgatttcagattaatggtcaagatcgttta |
30241519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 50488179 - 50488231
Alignment:
| Q |
155 |
aatctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaat |
207 |
Q |
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| T |
50488179 |
aatctcaaattaacagtcgagatcgtttaaaattgattttggtattgtgtaat |
50488231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 23344163 - 23344106
Alignment:
| Q |
174 |
agatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaa |
231 |
Q |
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| T |
23344163 |
agatcgtttaaacttgattttgttattgtgtaatctgaattgtccgatctcaaattaa |
23344106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 30000664 - 30000755
Alignment:
| Q |
156 |
atctcaaattaatgattgagatcgtttaaagttgattttgttattgtgtaatttgatttgtctgatttcaaattaatggccgatatcgttta |
247 |
Q |
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| T |
30000664 |
atctcaaattaacggtcgagattgtttgaaaatgattttgttatcgtgtaatttggacagtctggtttcaaattaatggctgagatcgttta |
30000755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 18169971 - 18169927
Alignment:
| Q |
187 |
ttgattttgttattgtgtaatttgatttgtctgatttcaaattaa |
231 |
Q |
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| T |
18169971 |
ttgattttgttattgtgtaatttgagccgtctgattttaaattaa |
18169927 |
T |
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