View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6596_low_9 (Length: 291)
Name: NF6596_low_9
Description: NF6596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6596_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 23672683 - 23672944
Alignment:
| Q |
15 |
tcaaagaataattaaacaattttgacggacggaaacattacacctttt-atggagttgaaaaatttaatttgacaagtttttccaccaactgtgtcacac |
113 |
Q |
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| T |
23672683 |
tcaaagaataattaaacaattttgacagacggaaacattacacttttttatggagttgagaaatttaatttgacaagtttttccaccaattgtgtcacat |
23672782 |
T |
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| Q |
114 |
atatccatttgaccttgtttgcctaaatattataaaaaggacaattaacaacacttagccttgtaacaaactaggccattagaaaagtggaatggatcat |
213 |
Q |
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| T |
23672783 |
atatccatttgaccttgtttgcctaaatattataaaaaggacaattaacaacacttagccttgtaacaaactaggccattagaaaagtggaatggatcat |
23672882 |
T |
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| Q |
214 |
cctataacatagtannnnnnnccactactaagatacaaagaatgtacaacaccacttaatcc |
275 |
Q |
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| T |
23672883 |
cctataacatagtatttttttccactactatgatacaaagaatgtacaacaccacttaatcc |
23672944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 23671390 - 23671468
Alignment:
| Q |
21 |
aataattaaacaattttgacggacggaaacattacacctttt-atggagttgaaaaatttaatttgacaagtttttcca |
98 |
Q |
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| T |
23671390 |
aataattaaacaattttgaaagagggaaacatgtcacttttttatggagttgaaaaatttaatttgataagtttttcca |
23671468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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