View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_1 (Length: 701)
Name: NF6597_high_1
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 662; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 690
Target Start/End: Original strand, 39763209 - 39763898
Alignment:
| Q |
1 |
gttccacttgcatagcaagaaggaattgcacaacaaaaaatttccagtaataacacagtattactagactgaattcaaaagctcttatgaatcaaccagt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39763209 |
gttccacttgcatagcaagaaggaattgcacaacaaaaaatttccagtaataacacagtattactagactgaattcaaaagctcttacgaatcaaccagt |
39763308 |
T |
|
| Q |
101 |
ggttttctgaggcttcttccacaagacaccaatcttcttcaacacattcccatttttctttccttgcagatcactccaatcatcagtctcatcataaaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39763309 |
ggttttctgaggcttcttccacaagacaccaatcttcttcaacacattcccatttttctttccttgcagatcactccaatcatcagtctcatcataaaag |
39763408 |
T |
|
| Q |
201 |
ttcaagtgcttattcttcatcacattattgttgtaattgttgtccatagacatcgatctctcagcgatctttccgttgttccctgctgaaaacatagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39763409 |
ttcaagtgcttattcttcatcacattattgttgtaattgttgtccatagacatcgatctctcagcgatctttccgttgttccctgctgaaaacatagcag |
39763508 |
T |
|
| Q |
301 |
cagctgcttctgcagccttcctccactgatcacattgcactttgattcttttcaattcatcttctttttccgtattcgccacttttgcagcttccaactg |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
39763509 |
ctgctgcttctgcagccttcctccactgatcacattgcactttgattcttttcaattcatcttctttttccatattcgccacttgtgcagcttccaactg |
39763608 |
T |
|
| Q |
401 |
ctcagccaccttcgccgccttactactgctcttctctgcctcctccttcattatcttcaatttagcaatagcatcgcgttctgcagccttagccgcccct |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39763609 |
ctcagccaccctcgccgccttactactgctcttctctgcctcctccttcattatcttcaatttagcaatagcatcacgttctgcagccttagccgcccct |
39763708 |
T |
|
| Q |
501 |
atttcggctgcaacttcctctttcattataccatcatgtgtgaatgtgaacctcttattgatttcccacttcaacatttcattttcttctgatatgtttt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39763709 |
atttcggctgcaacttcctctttcattatgccatcatgtgtgaatgtgaacctcttattgatttcccacttcaacatttcattttcttctgatatgtttt |
39763808 |
T |
|
| Q |
601 |
gcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttctt |
690 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39763809 |
gcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttctt |
39763898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 85 - 558
Target Start/End: Original strand, 39754338 - 39754806
Alignment:
| Q |
85 |
ttatgaatcaaccagtggttttctgaggcttcttccacaagacaccaatcttcttcaacacattcccatttttctttccttgcagatcactccaatcatc |
184 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||| | || ||| | |
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| T |
39754338 |
ttatgaatcaaccactgattttctgagacttcttccacaagacaccaatcttcttcaacacattcccatttttccttcttttcaaatcatttcagtcacc |
39754437 |
T |
|
| Q |
185 |
agtctcatcataaaagttcaagtgcttattcttcatcacattattgttgtaattgttgtccatagacatcgatctctcagcgatctttccgttgttccc- |
283 |
Q |
| |
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| ||||||| |||| | ||||||||||||||||||| ||||||| | || ||| |||||||||||||||| |||||||| || ||||||| |
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| T |
39754438 |
aacctcatcacaaaaat------gcttattcttcatcacattgttgttgt---tcttatccgtagacatcgatctctcggcgatcttgccactgttcccc |
39754528 |
T |
|
| Q |
284 |
tgctgaaaacatagcagcagctgcttctgca-gccttcctccactgatcacattgcactttgattcttttcaattcatcttctttttccgtattcgccac |
382 |
Q |
| |
|
||| ||||||| |||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39754529 |
tgccgaaaacacagcagcagttgcctctgcaagcctttctccactgatcacattgcactttgattcttttcaattcatcttctttttccgtattcgccac |
39754628 |
T |
|
| Q |
383 |
ttttgcagcttccaactgctcagccaccttcgccgccttactactgctcttctctgcctcctccttcattatcttcaatttagca--atagcatcgcgtt |
480 |
Q |
| |
|
| ||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||| | | ||| | ||||||||||| |
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|
| T |
39754629 |
ctgtgcagcttccaactgctcagccaccctcaccaccttactattgctcttctctgcctcctccttcattatctgaatagttgcaagaaagcatcgcgtt |
39754728 |
T |
|
| Q |
481 |
ctgcagccttagccgcccctatttcggctgcaacttcctctttcattataccatcatgtgtgaatgtgaacctcttat |
558 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| || ||| ||| || ||||||||||||||||||| |||| |
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|
| T |
39754729 |
ctgcagccttaaccgcccctatttcggccacaacttcttccctcaccatatcagcatgtgtgaatgtgaacctgttat |
39754806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 535 - 677
Target Start/End: Original strand, 39746656 - 39746797
Alignment:
| Q |
535 |
catgtgtgaatgtgaacctcttattgatttcccacttcaacatttcattttcttctgatatgttttgcagtgttgtctccttatccatcatttcaccctt |
634 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |||||||| ||||| | ||| |||||| ||||||||||||||||||| |||||||||| |
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|
| T |
39746656 |
catgtgtgaatgtgaacctattattgatttccaacttcagaatttcattctcttcag-tattctttgcattgttgtctccttatccatcgtttcaccctt |
39746754 |
T |
|
| Q |
635 |
caatgccactacatattcgtctaaccttttaagttccttctta |
677 |
Q |
| |
|
| || | |||||||| || ||||||||||||| ||||||| |
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| T |
39746755 |
ctgcaccgccacatattcatcaaaccttttaagttgcttctta |
39746797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 39746376 - 39746476
Alignment:
| Q |
214 |
tcttcatcacattattgttgtaattgttgtccatagacatcgatctctcagcgatctttccgttgttccctgctgaaaacatagcagcagctgcttctgc |
313 |
Q |
| |
|
|||||| |||||| || ||||| ||||||||| |||||||| |||||| |||||||||||| ||| || |||| |||||||||||| ||||||| ||||| |
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| T |
39746376 |
tcttcaccacattgttcttgtagttgttgtccgtagacatcaatctctgagcgatctttccattgatcgctgccgaaaacatagcaacagctgcctctgc |
39746475 |
T |
|
| Q |
314 |
a |
314 |
Q |
| |
|
| |
|
|
| T |
39746476 |
a |
39746476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 683
Target Start/End: Original strand, 39754805 - 39754896
Alignment:
| Q |
592 |
atatgttttgcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattct |
683 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||| ||||||||||||| || | ||||||| ||| ||||||||||| ||||| |||| |||| |
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|
| T |
39754805 |
atatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgccacatatttgtccaaccttttaagctccttgttaagttct |
39754896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 22473160 - 22473068
Alignment:
| Q |
240 |
ttgtccatagacatcgatctctcagcgatctttccgttgttccctgctgaaaacatagcagcagctgcttctgcagccttcctccactgatca |
332 |
Q |
| |
|
||||||| ||||| |||||||||| | ||| || ||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
22473160 |
ttgtccaaagacacagatctctcagtaagcttcccattgttccctgccgaaatcatagcagcagctgcctctgcagccttcctccattgatca |
22473068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 22473278 - 22473220
Alignment:
| Q |
104 |
tttctgaggcttcttccacaagacaccaatcttcttcaacacattcccatttttctttc |
162 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||| || || ||||||||||||| |
|
|
| T |
22473278 |
tttctgaggcttcttccataagactccaaacttcttcagcatgttaccatttttctttc |
22473220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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