View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_10 (Length: 403)
Name: NF6597_high_10
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 50389484 - 50389867
Alignment:
| Q |
1 |
tattgttttcttcatatgcaataagtcaacattagaaacgaataagggcgccaatattggttttaaacaacttgctccatctcatttatacaatagcact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389484 |
tattgttttcttcatatgcaataagtcaacattagaaacgaataagggcaccaatattggttttaaacaacttgctccatctcatttatacaatagcact |
50389583 |
T |
|
| Q |
101 |
tctacttctataagtgccaacaaaagtgctagctattgcaaatttgcttgcaatccaagtaaatatggcaattggtgttcatgattggggagacatgaag |
200 |
Q |
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| T |
50389584 |
tctacttctataagtgccaacaaaagtgctagctattgcaaatttgcttgcaatccaagtaaatatggcaattggtgttcatgattggggagacatgaag |
50389683 |
T |
|
| Q |
201 |
agtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctgccggagccacctacatgttcggtctatact |
300 |
Q |
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| T |
50389684 |
agtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctgccggagccacctacatgttcggtctatact |
50389783 |
T |
|
| Q |
301 |
ccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattttggtagcaatgttg |
384 |
Q |
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| T |
50389784 |
ccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattttggtagcaatgttg |
50389867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 171 - 384
Target Start/End: Original strand, 50392928 - 50393141
Alignment:
| Q |
171 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
270 |
Q |
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| T |
50392928 |
attggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttcttatcatggcagcag |
50393027 |
T |
|
| Q |
271 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
370 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50393028 |
ccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagttttttcaaagattt |
50393127 |
T |
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| Q |
371 |
tggtagcaatgttg |
384 |
Q |
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||||||||| |||| |
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| T |
50393128 |
tggtagcaacgttg |
50393141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 171 - 384
Target Start/End: Original strand, 50384509 - 50384722
Alignment:
| Q |
171 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
270 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| | || | |
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| T |
50384509 |
attggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcctttctaatcatggcagcag |
50384608 |
T |
|
| Q |
271 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
370 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
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| T |
50384609 |
ccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctccttagttttttcaaagactt |
50384708 |
T |
|
| Q |
371 |
tggtagcaatgttg |
384 |
Q |
| |
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||||||||| |||| |
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| T |
50384709 |
tggtagcaacgttg |
50384722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 50406581 - 50406671
Alignment:
| Q |
211 |
tccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctgccggagccacctacatgttcggtctatactc |
301 |
Q |
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||||||| ||||| ||||| ||||| || | ||||| || |||||||||||||| ||| | ||||||||||||||||| ||||| ||||| |
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| T |
50406581 |
tccaagttatcacaggacgatggttcgtggtgtttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactc |
50406671 |
T |
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