View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_16 (Length: 384)
Name: NF6597_high_16
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Original strand, 56278685 - 56279058
Alignment:
| Q |
3 |
ttaatagtatttcagtcaatgcataaccatttgatctttgcatacttttgcttgttaagtatctggcaatgttttatgatgagtttattttctatttctt |
102 |
Q |
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| T |
56278685 |
ttaatagtatttcagtcaatgcataaccatttgatctttgcatacttttgcttgttaagtatctgccaatgttttatgatgagtttattttctatttctt |
56278784 |
T |
|
| Q |
103 |
tgataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaa |
202 |
Q |
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| T |
56278785 |
tgataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaa |
56278884 |
T |
|
| Q |
203 |
tagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattccagtatacaattaaaatagctccctgcaacgccta |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
56278885 |
tagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattccaatatacaattaaaatagctccctgcaacgccta |
56278984 |
T |
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| Q |
303 |
catccatctcacccaacataactactgaactgatcataactctgccataatgcaaaatgattcagcagtataat |
376 |
Q |
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| T |
56278985 |
catccatctcacccaacataactactgaactgatcataactctgccataatgcaaaatgattcagcagtataat |
56279058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 46571319 - 46571641
Alignment:
| Q |
4 |
taatagtatttcagtcaatgcataaccatttgatctttgcatacttttgcttgttaagtatctggcaatgttttatgatgagtttattttctatttcttt |
103 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||| ||| |
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| T |
46571319 |
taatagtatttcagtcaatgcataaccatttcatctttgcatacttttgcttgttaaatatctgacattgttttatgatgaatttattttctatttattt |
46571418 |
T |
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| Q |
104 |
gataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaat |
203 |
Q |
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||| |||||||||||||| ||||| ||||| | | || || |||| || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
46571419 |
gat-aaagaaggactaagaagtgtcataggattgc---aatgaatatttctaacgagcacaacacatgc----catgtgatattggtttacatcaagaat |
46571510 |
T |
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| Q |
204 |
agtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca-------------gtatacaattaaaatagctcc |
290 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||| |
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| T |
46571511 |
agtcacattacatgacactaaagtatctcaccaaattctaccagccccgtgcattggccaattccaaaagacagcacccaaatacaattagaatagctcc |
46571610 |
T |
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| Q |
291 |
ctgcaacgcctacatccatctcacccaacat |
321 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
46571611 |
ctgcaatgcctacatccatctcacccaacat |
46571641 |
T |
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