View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_19 (Length: 366)
Name: NF6597_high_19
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 40215676 - 40216028
Alignment:
| Q |
1 |
cttccccacttctctttcaggtatttgagagattcacaaatgtgatcatcaaatacagctctgtccaagttgattttatcaaaagccttcagatctttga |
100 |
Q |
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| T |
40215676 |
cttccccacttctctttcaaatatttgagagattcacaaatgtgatcatcaaatacagatctttccaagttgattttatcaaaagccttcagatctttga |
40215775 |
T |
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| Q |
101 |
ctaaccctcaaaagaaattgcgaaggacctttgggttgcctgagcataacaacattttctcaaacaaaaaataggacaacaactgcttaaaatacaaacc |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40215776 |
ctaaccctcaaaagaaactgcgaaggacctttgggttgcctgagcataacaacattttctcaaacaaaaaataggacaacaactgcttaaaatac-aacc |
40215874 |
T |
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| Q |
201 |
tactgtgctcatcatctaccccagcatctttcaagattgtcttaaaatatgatgtttagaattgtaatcagtcccgatatctttgatatcaaagacactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40215875 |
tactgtgctcatcatctaccccagcatctttcaagattgtcttaaaatatgatgtttagaattgtaatcagtcccgatatctttgatatcaaagacactt |
40215974 |
T |
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| Q |
301 |
gcgacctctttggtacataaacagaaagattatttaccgttaaagacttgatga |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40215975 |
gcgacctctttggtacataaacagaaagattatttaccgttaaagacttgatga |
40216028 |
T |
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