View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_22 (Length: 344)
Name: NF6597_high_22
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 36 - 337
Target Start/End: Original strand, 26259011 - 26259310
Alignment:
| Q |
36 |
tataggagaatatggagtataactaacctcctctaagaaaagtaatttaatctgacattcagttatatcaattaatcttcttattcttattaaaacaagg |
135 |
Q |
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| T |
26259011 |
tataggagaatatggagtataactaacctcctctaagaaaagtaatttaatctgacattcagttacatcaattaatcttcttattcttattaaaacaagg |
26259110 |
T |
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| Q |
136 |
gtgtatgtctataatgtgaattttaaccaaaaataattttagtttgttctaatagaatagaagagtttttagaaaataaaacttatatattaaaaaatgt |
235 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26259111 |
gt--atgtctataatgtgaattttaatgaaaaataattttagtttgttctaatagaatagaagagtttttagaaaataaaacttatatattaaaaaatgt |
26259208 |
T |
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| Q |
236 |
attatgtaaattttgtaactatttagaaccaaaaagaaaattatttcaaactatcatttcttacgcattttgatctatgttgtaacatatgaaattgatg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26259209 |
attatgtaaattttgtaactatttagaaccaaaaagaaaattatttcaaactatcatttcttacgcattttgatctatgttgtaacatatgaaattgatg |
26259308 |
T |
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