View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_29 (Length: 251)
Name: NF6597_high_29
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_29 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 44653578 - 44653823
Alignment:
| Q |
19 |
atatttttggagtatatgcaagatggtattgaaaagttgcaaattattttgggagtcccatgagccaaacatgagctctactaaattagtgtaactaatg |
118 |
Q |
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| T |
44653578 |
atatttttggagtatatgcaagatggtattgaaaagttgcaaattattttgggagtcccatgagccaaacatgagctctactaaattagtgtaactaatg |
44653677 |
T |
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| Q |
119 |
tcataaccgaatgaacataaactccaaaatgaacttaaacggcatgttttcaacaacaacaaaaaatgtttccta-------------tataagtatata |
205 |
Q |
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| T |
44653678 |
tcataaccgaatgaacataaactccaaaatgaacttaaatggcatgttttcaacaacaacaaaaaatgtttcctataccctccacctctataagtatata |
44653777 |
T |
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| Q |
206 |
atccgatgcatgtttgtttattaacaggtaatatatatctaggtga |
251 |
Q |
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| T |
44653778 |
atccgatgcatgtttgtttattaacaggtaatatatatctaggtga |
44653823 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 44651783 - 44651663
Alignment:
| Q |
53 |
agttgcaaattattttgggagtcccatgagccaaacatgagctctactaaa--ttagtgtaactaatgtcataaccgaatgaacataaactccaaaatga |
150 |
Q |
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| T |
44651783 |
agttgcagattattttgggtgttccatgagccaaacataagttctactaaaattaattgtaactaatgccataaactaaggaacatgaactccaaaatgt |
44651684 |
T |
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| Q |
151 |
acttaaacggcatgttttcaa |
171 |
Q |
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| T |
44651683 |
agttaaacgccaagttttcaa |
44651663 |
T |
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