View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_3 (Length: 526)
Name: NF6597_high_3
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 508
Target Start/End: Complemental strand, 35922377 - 35921887
Alignment:
| Q |
12 |
catcatcaccacctccattacttcctattctcctcttcaccatcttcttcctcttccccaccattatcacctcagtttctctacctcttccacctaaatc |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922377 |
catcaccaccacctccattacttcctattctcctcttcaccatcttcttcctcttccccaccattatcacctcagtttctctacctcttccacctaaatc |
35922278 |
T |
|
| Q |
112 |
atcaccttcttcaccttccacttccacttccacttccactcttgagccaaaccaactcaaagcccttcaatccctcaacatccccacatcaaagaaccct |
211 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922277 |
atcaccttcttcaccttccacttccacttccact------cttgagccaaaccaactcaaagcccttcaatccctcaacatccccacatcaaagaaccct |
35922184 |
T |
|
| Q |
212 |
tgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcatttcccttaccctttcaaactgttcaacctccctat |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922183 |
tgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcatttcccttaccctttcaaactgttcaacctccctat |
35922084 |
T |
|
| Q |
312 |
ctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgccccattgctccaattcacttccctcctcaactcacatc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922083 |
ctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgccccattgctccaattcacttccctcctcaactcacatc |
35921984 |
T |
|
| Q |
412 |
ctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaat |
508 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921983 |
ctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaat |
35921887 |
T |
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