View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_7 (Length: 413)
Name: NF6597_high_7
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 26072814 - 26072441
Alignment:
| Q |
16 |
atggcattaactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072814 |
atggcattgactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
26072715 |
T |
|
| Q |
116 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072714 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgataattgctaaactgcatgaactcataggcaaattgtttgatta |
26072615 |
T |
|
| Q |
216 |
ttacaagtcactgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttgga |
315 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
26072614 |
ttacaagtcagtgcagcctattggttttgtttctagtgattcctcctctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttgga |
26072518 |
T |
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| Q |
316 |
ggtaatgtggatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggt |
392 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26072517 |
ggtaatgtggatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagtgagttggt |
26072441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 1670888 - 1671261
Alignment:
| Q |
16 |
atggcattaactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670888 |
atggcattgactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
1670987 |
T |
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| Q |
116 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgatta |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670988 |
tggagtatcttgatttttgttttggttggatgtatggggtggaaaaggctaaaatgataattgctaaactgcatgaactcataggcaaattgtttgatta |
1671087 |
T |
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| Q |
216 |
ttacaagtcactgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttgga |
315 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
1671088 |
ttacaagtcagtgcagcctattggttttgtttctagtgattcctcctctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttgga |
1671184 |
T |
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| Q |
316 |
ggtaatgtggatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggt |
392 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1671185 |
ggtaatgtggatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagtgagttggt |
1671261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 44271591 - 44271229
Alignment:
| Q |
16 |
atggcattaactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaaga |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44271591 |
atggcattgactatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatattgatcctaggtacaaga |
44271492 |
T |
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| Q |
116 |
tggagtatcttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgatta |
215 |
Q |
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||||||||||||||||||||||||||||||||||| || | ||||||| |||| |||| || | ||||| ||||||| ||||||||||||| |
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| T |
44271491 |
tggagtatcttgatttgtgttttggttggatgtat-ggaaagnaaaggct-gcctgataattg-aaacccgcatg-cctcatag--caattgtttgatta |
44271398 |
T |
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| Q |
216 |
ttacaagtcactgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttgga |
315 |
Q |
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|| ||||||| | |||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
44271397 |
tt-caagtca--ggcacctatt-gttttgtttctagtg-ttcctactctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttgga |
44271306 |
T |
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| Q |
316 |
ggtaatgtggatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggt |
392 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
44271305 |
ggtaatgtggatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagttagttggt |
44271229 |
T |
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