View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_high_9 (Length: 405)
Name: NF6597_high_9
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 43468310 - 43468596
Alignment:
| Q |
13 |
aatatcaacacagacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaatcaatcaattatgaga |
112 |
Q |
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| T |
43468310 |
aatatcaacacagacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaaccaatcgattatgaga |
43468409 |
T |
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| Q |
113 |
aaatatattcaacaaaatggatatatagcttactgttacacattccagaagtcttttatattaacgaccaatcaaaaaagtatatatatgtgcgtgtgcc |
212 |
Q |
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| T |
43468410 |
aaatatattcaacaaaatagatatatagcttactgttacacattccagaagtcttctatattaacgaccaatcaaaaaataatgtttgtttctatgag-c |
43468508 |
T |
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| Q |
213 |
tatctgcgtggatatgtatgtaaactgaatatttaggtctgataaaagattgatacatgtttgtttctatgagcataattcagttata |
300 |
Q |
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| T |
43468509 |
tatctgtgtggatatgtatgtaaactgaatatttaggtctcataaaagactgatacatgtttgtttctatgagcataattcagttata |
43468596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 43468636 - 43468740
Alignment:
| Q |
301 |
tgagactatccacttattcatattaagaaagtgaatttctaaccactaaataatttgataaaaaataataatatatttgtataatcatagggctcttagt |
400 |
Q |
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| T |
43468636 |
tgagactatccacttatttctattaagaaagtgaatttataaccactgaattatttgataaaaaataataatatatttgtataatcatagggctcttagt |
43468735 |
T |
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| Q |
401 |
tattt |
405 |
Q |
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| T |
43468736 |
tattt |
43468740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 43477383 - 43477430
Alignment:
| Q |
19 |
aacacagacattcttaaagaagggttaacctaggttctgaagacaaat |
66 |
Q |
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| T |
43477383 |
aacaaagacattcttaacgaagggttaacctagattctgaagacaaat |
43477430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 19208900 - 19208844
Alignment:
| Q |
311 |
cacttattcatattaagaaagtgaatttctaaccactaaataatttgataaaaaata |
367 |
Q |
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| T |
19208900 |
cacttattcactttaaaaatgtgaatttctaaccactaaaccatttgacaaaaaata |
19208844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 382095 - 382039
Alignment:
| Q |
309 |
tccacttattcatattaagaaagtgaatttctaaccactaaataatttgataaaaaa |
365 |
Q |
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| T |
382095 |
tccacttattcattttaaaaaggtgaatctctaaccgctaaattatttgacaaaaaa |
382039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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