View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6597_low_11 (Length: 400)

Name: NF6597_low_11
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6597_low_11
NF6597_low_11
[»] chr8 (16 HSPs)
chr8 (1-381)||(30430025-30430405)
chr8 (96-221)||(30447280-30447405)
chr8 (250-356)||(30431763-30431869)
chr8 (238-351)||(30447391-30447504)
chr8 (263-380)||(30439798-30439915)
chr8 (248-360)||(30429533-30429646)
chr8 (98-211)||(30429413-30429527)
chr8 (96-220)||(30431124-30431249)
chr8 (285-377)||(30440294-30440386)
chr8 (244-297)||(30436699-30436752)
chr8 (238-381)||(30431236-30431384)
chr8 (153-197)||(30440192-30440236)
chr8 (238-297)||(30415556-30415615)
chr8 (244-294)||(30430749-30430799)
chr8 (244-358)||(30414811-30414925)
chr8 (149-221)||(30436635-30436707)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 30430025 - 30430405
Alignment:
Q  1 ttaaataagtgagaaaatgacattctnnnnnnncaattggtaaaaagaaatagttttatcagtttgggtctttagtcagcctttnnnnnnnccggtcatc 100  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||| | |||||||| |||||        ||| ||||    
T  30430025 ttaaataagtgagaaaatgacattctaaaaaaacaattggtaaaaagaaatagttttatcactttggatttttagtcaacctttataaagatcggccatc 30430124  T
Q  101 tgagatgattgagatatttttaagagattggtgcatctcaaatttgcatttctatatgcataaacaacaatcaaatctttaacaaaattgttaaagaccc 200  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30430125 tgagatgattgagatctatttaagatattggtgcatcccaaatttgcatttctatatgcataaacaacaatcaaatctttaacaaaattgttaaagaccc 30430224  T
Q  201 aaacatttgtgacacaccatgnnnnnnnnnaagacgcttgtgacacaccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaatttatgtata 300  Q
    |||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30430225 aaacatttgtgacacaccatgtttttttt-aagacgcttgtgacacaccatgttatagtcaatcgtgtgaaaacatatatgttaatgaaatttatgtata 30430323  T
Q  301 cttcatattt-gtgttcaaattcacattataagaaacaaaacacaaacaaaaattgatcgacatataaagctaaccttcatc 381  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30430324 ctttatatttggtgttcaaattcacattataagaaacaaaacacaaataaaaattgatcgacatataaagctaaccttcatc 30430405  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 30447280 - 30447405
Alignment:
Q  96 tcatctgagatgattgagatatttttaagagattggtgcatctcaaatttgcatttctatatgcataaacaacaatcaaatctttaacaaaattgttaaa 195  Q
    |||||||||||||||||||  | |||||||||||| ||||||  ||||||  |||||||||||||||||| |||||||||||||||||||||| ||| ||    
T  30447280 tcatctgagatgattgagacctatttaagagattgatgcatccaaaatttatatttctatatgcataaaccacaatcaaatctttaacaaaatggttcaa 30447379  T
Q  196 gacccaaacatttgtgacacaccatg 221  Q
    || |||||||||||||||| ||||||    
T  30447380 gagccaaacatttgtgacataccatg 30447405  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 30431763 - 30431869
Alignment:
Q  250 atgttattgtcaatcgtgtgaaaacatatatgttaatgaaatttatgtatacttcatatttgtgttcaaattcacattataagaaacaaaacacaaacaa 349  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||||||| ||  | || |||||||||||||||| ||||||||||||||||||| |||||    
T  30431763 atgttatagtcaatcgtatgaaaacttatatgttaatgaaatttatgtttaaattatttttgtgttcaaattcatattataagaaacaaaacacgaacaa 30431862  T
Q  350 aaattga 356  Q
    |||||||    
T  30431863 aaattga 30431869  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 30447391 - 30447504
Alignment:
Q  238 ttgtgacacaccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaatttatgtatacttcatatttgtgttcaaattcacattataagaaaca 337  Q
    |||||||| |||||| ||| || |||| | ||||||||| |||||||||||||||||| | ||| | || ||||||||||||||||||||||||||||||    
T  30447391 ttgtgacataccatgctatagtaaatcatatgaaaacatgtatgttaatgaaatttatatttacattatttttgtgttcaaattcacattataagaaaca 30447490  T
Q  338 aaacacaaacaaaa 351  Q
    |||||| |||||||    
T  30447491 aaacactaacaaaa 30447504  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 380
Target Start/End: Original strand, 30439798 - 30439915
Alignment:
Q  263 tcgtgtgaaaacatatatgttaatgaaatttatgtatacttcatatttgtgttcaaattcacattataagaaacaaaacacaaacaaaaattgatcg-ac 361  Q
    |||| |||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||| ||||||| |||||| ||||| ||||| ||| |     
T  30439798 tcgtatgaaaacatatatgttaatgaaatttatgtttacattatttttgcgttcaaattcacattacaagaaac-aaacactaacaataattggtcgtat 30439896  T
Q  362 atataaagctaaccttcat 380  Q
     ||| ||||||||||||||    
T  30439897 gtatgaagctaaccttcat 30439915  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 30429533 - 30429646
Alignment:
Q  248 ccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaatttatgt-atacttcatatttgtgttcaaattcacattataagaaacaaaacacaaa 346  Q
    ||||||||| ||||||||| ||||||||||||| |||||  ||||||||| | ||   || |||||||||||||| |||||||||||||||||| || ||    
T  30429533 ccatgttatagtcaatcgtatgaaaacatatatcttaatcgaatttatgttagacaatatttttgtgttcaaatttacattataagaaacaaaatactaa 30429632  T
Q  347 caaaaattgatcga 360  Q
     |||||||||||||    
T  30429633 taaaaattgatcga 30429646  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 30429413 - 30429527
Alignment:
Q  98 atctgagatgattgagatatttttaagagattggtgcatctcaa-atttgcatttctatatgcataaacaacaatcaaatctttaacaaaattgttaaag 196  Q
    |||| ||||||||||||| |  |||||| |||| | |||| ||| ||||| |||| ||||||||||||| ||||||||||||||| | |||| |||||||    
T  30429413 atctaagatgattgagatctaattaagatattgatccatcccaacatttgaatttttatatgcataaaccacaatcaaatctttagctaaatggttaaag 30429512  T
Q  197 acccaaacatttgtg 211  Q
    | |||||||||||||    
T  30429513 aaccaaacatttgtg 30429527  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 30431124 - 30431249
Alignment:
Q  96 tcatctgagatgattgagatatttttaagagattggtgcatc-tcaaatttgcatttctatatgcataaacaacaatcaaatctttaacaaaattgttaa 194  Q
    |||||| |||||||||| |||| ||||| |||||| | |||| | | ||||| |||| |||| ||||||||  |||| ||||||||||| |||| |||||    
T  30431124 tcatcttagatgattgacatatatttaatagattgatccatccttacatttgtatttgtataagcataaacctcaataaaatctttaactaaatggttaa 30431223  T
Q  195 agacccaaacatttgtgacacaccat 220  Q
    ||| ||||||||||||| ||||||||    
T  30431224 agaaccaaacatttgtgccacaccat 30431249  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 30440294 - 30440386
Alignment:
Q  285 atgaaatttatgtatacttcatatttgtgttcaaattcacattataagaaacaaaacacaaacaaaaattgatcgacat-ataaagctaacctt 377  Q
    ||||||||||||| ||| | || |||||||| || ||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  30440294 atgaaatttatgtttacattatttttgtgttaaacttcacgttataagaaac-aaacactaacaaaaattgatcgacataataaagctaacctt 30440386  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 30436699 - 30436752
Alignment:
Q  244 cacaccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaatttatgt 297  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||||||||||||    
T  30436699 cacaccatgttatagtcaatcgtatgaaaatatctatgttaatgaaatttatgt 30436752  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 381
Target Start/End: Original strand, 30431236 - 30431384
Alignment:
Q  238 ttgtgacacaccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaattta----tgtatacttcatatttgtgttcaaattcacattataaga 333  Q
    ||||| |||||||| |||| || |||||| ||||||| |||  |||||  |||||||    ||| ||| | || ||| |||||||||||| ||||||  |    
T  30431236 ttgtgccacaccatattatagttaatcgtatgaaaacttatcagttaacaaaatttaaatatgtttacattatttttatgttcaaattcatattatagaa 30431335  T
Q  334 aacaaaacacaaacaaaaattgatcgacat-ataaagctaaccttcatc 381  Q
    |||||||||| ||||||||||||| ||  | ||||||||||||||||||    
T  30431336 aacaaaacactaacaaaaattgatagatttaataaagctaaccttcatc 30431384  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 30440192 - 30440236
Alignment:
Q  153 tatatgcataaacaacaatcaaatctttaacaaaattgttaaaga 197  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||    
T  30440192 tatatgcataaaccacaatcaaatctttaactaaatggttaaaga 30440236  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 30415556 - 30415615
Alignment:
Q  238 ttgtgacacaccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaatttatgt 297  Q
    ||||| ||| ||||||||| |||||| || ||||||||||| | ||||||||||||||||    
T  30415556 ttgtgccaccccatgttatagtcaatagtatgaaaacatatctcttaatgaaatttatgt 30415615  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 30430749 - 30430799
Alignment:
Q  244 cacaccatgttattgtcaatcgtgtgaaaacatatatgttaatgaaattta 294  Q
    ||||||||||||| |||||| || |||||||||||  ||||||||||||||    
T  30430749 cacaccatgttatagtcaatagtatgaaaacatatccgttaatgaaattta 30430799  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 30414811 - 30414925
Alignment:
Q  244 cacaccatgttattgtcaatcgtgtgaaaacatatat--gttaatgaaatttatgtatacttcatatttgtgttcaaattcacattataagaaacaaaac 341  Q
    |||||||| |||| ||||  ||| |||||||||||||  |||||  |||||||||| ||| | || ||||||||||| ||||||||| || |||| ||||    
T  30414811 cacaccattttatagtcagccgtatgaaaacatatattggttaacaaaatttatgtttacattatttttgtgttcaagttcacattagaa-aaac-aaac 30414908  T
Q  342 acaaacaaaaattgatc 358  Q
    || ||||| ||||||||    
T  30414909 actaacaataattgatc 30414925  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 30436635 - 30436707
Alignment:
Q  149 tttctatatgcataaacaacaatcaaatctttaacaaaattgttaaagacccaaacatttgtgacacaccatg 221  Q
    |||| |||||| ||||| ||  |||||||||||||||||| |||||||| | || |||| ||| |||||||||    
T  30436635 tttccatatgcgtaaactacggtcaaatctttaacaaaatggttaaagagctaagcattggtgtcacaccatg 30436707  T

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