View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_low_12 (Length: 398)
Name: NF6597_low_12
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 10144533 - 10144165
Alignment:
| Q |
18 |
aaaacaatcttctaaaatgcataggagtatgggacctgtgctgagtatgaaagtgcgataaaatcggctgatatgaagtctttctttccttttcccatat |
117 |
Q |
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| T |
10144533 |
aaaacaatcttctaaaatgcataggagtatgggacttgtgctgagtatgaaagtgcgataaaatcggctgatatgaagtctttcttttcttttcctatat |
10144434 |
T |
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| Q |
118 |
attcgatttttatatcgagtctaactcatcctcgcataatcagtgtgtaaagtgagaagtgtcactctttctttaaaatgaataggttctgataccaata |
217 |
Q |
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| T |
10144433 |
attgagtttttatatcgagtctatctcatcctcgcataatcggtgtgtaaagtgagaagtgtcactctttctttaaaatgaataggttctgatatcaata |
10144334 |
T |
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| Q |
218 |
ttaggtttataaaacttgtgcttgctattgcataatcgtgagacacttcgaccgatcaattacttttaagaatgggaacgtcagacttatccatatttgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10144333 |
ttaggtttataaaacttgtgcttgctattgcataattgtgagacacttcgaccgatcaattacttttaaggatgggaacgtcagacttatccatatttgg |
10144234 |
T |
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| Q |
318 |
atatgtttcgcacaaaatccttgcacaaggcttgtaagggtgaagtgattaagtttttctgatgagaat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10144233 |
atatgtttcgcacaaaatccttgcacaaggcttgtaagggtgaagtgattaagtttttctgatgagaat |
10144165 |
T |
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