View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6597_low_13 (Length: 396)
Name: NF6597_low_13
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 19468654 - 19469018
Alignment:
| Q |
1 |
atcaaatgttaacctttcgcattaaatttaggtgaatttggactttgcagacctgtttctaaactannnnnnngaacagtgtttttaaactacttgaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19468654 |
atcaaatgttaacctttcgcattaaatttaggtgaatttggactttgcagacctgtttataaactatttttttgaacagtgtttttaaactacttgaatt |
19468753 |
T |
|
| Q |
101 |
gaattaatgaagaggtagcgttggatgctactatagctgc------cactgccacaaatttgtagttggctttaaaggaatataggctgtgattgtgaga |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19468754 |
gaattaatgaagaggtagcgttggatgctgctatagctgccactgccactgccacaaatttgtagttggctttaaaggaatataggctgtaattgtgaga |
19468853 |
T |
|
| Q |
195 |
cctcattcattaggaactttgatgcttatcagaagttggtgcaaactttaatttaatttatatttgaataatgttggaaacactcactcgttttagcata |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
19468854 |
cctcattcattaggaactttgatgcttatcagaagttggtgcaaactttaatttaatttatatttgaataatgttagaaa----cactcgttttagcata |
19468949 |
T |
|
| Q |
295 |
attttttgaacattcattctcttattattatttaaaatacataagagtcacattattttgataataaatt |
364 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19468950 |
atttttt-aacactcattctcttattattatttgaaatacataagagtcacattattttgataataaatt |
19469018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University