View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_low_2 (Length: 615)
Name: NF6597_low_2
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Complemental strand, 29438852 - 29438389
Alignment:
| Q |
9 |
gaaatgaacatggtggagaaatgtttgtcaaatcagttagctagcttgcaggaagagaagagagaacttgaagagaaaatcaatgccataaaatctgaaa |
108 |
Q |
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| T |
29438852 |
gaaatggacatggtggagaaatgtttgtcaaatcagttagctagcttgcaggaagagaagagagaacttgaagagaaaatcaatgccataaaatctgaga |
29438753 |
T |
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| Q |
109 |
ttgcagattttacagcacagagagaaatggttgaaaagagaaagacagaattgttttgtaaaggaaaagagatgagagtcgaaagggatgatttgaggaa |
208 |
Q |
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| T |
29438752 |
ttgcagattttagagcacagagagaaatggttgaaaagagaaagacagaattgttttgtaaaggaaaagagatgagagtcgaaagggatgatttgaggaa |
29438653 |
T |
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| Q |
209 |
tcaagttccaagattaaaagctgagaaggaattggcaaagataacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaagc |
308 |
Q |
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| T |
29438652 |
tcaagttccaagattaaaagctgagaaggaattggcaaagataacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaagc |
29438553 |
T |
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| Q |
309 |
accaattttgaagagtggagaacataatataagctatataaagaaaattttccttttcattctcctctaaaccatcaaaacttattccaagtatatcctg |
408 |
Q |
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| T |
29438552 |
accaattttgaagagtggagaacataatataagctatataaagaaaaatttccttttcattctcctctaaaccatcaaaacttattccaagtatatcctg |
29438453 |
T |
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| Q |
409 |
aactttcctattaggagttctcttgtatttatccaatgcagattctcactgatgaatacttcta |
472 |
Q |
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| T |
29438452 |
aactttcctattaggagttctcttgtatttatccaatgcagattcccactgatgaatacttcta |
29438389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 470 - 566
Target Start/End: Complemental strand, 29438179 - 29438081
Alignment:
| Q |
470 |
ctaggccaacccta--acttgcattttctcgaacatttgcaagaaaactcgcatatcgaaattgactatatattgtgttgtacacagctttagcaatgg |
566 |
Q |
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| T |
29438179 |
ctaggccaaccctatgacttgcattttctctaacatttgcaagaaaactcgcatatcgaaattgactatatattgtgttgtatacagctttagcaatgg |
29438081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 29634283 - 29634227
Alignment:
| Q |
251 |
aacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaag |
307 |
Q |
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| T |
29634283 |
aacacgagataatattgaagctgagtggtccaagcttcgagaacaattcattcgaag |
29634227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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