View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6597_low_23 (Length: 343)

Name: NF6597_low_23
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6597_low_23
NF6597_low_23
[»] chr3 (3 HSPs)
chr3 (173-334)||(44653985-44654146)
chr3 (1-150)||(44654285-44654435)
chr3 (60-118)||(37773117-37773175)
[»] chr8 (1 HSPs)
chr8 (60-118)||(26626264-26626322)
[»] chr5 (6 HSPs)
chr5 (22-117)||(8698215-8698306)
chr5 (59-102)||(41492180-41492223)
chr5 (60-118)||(2588212-2588270)
chr5 (22-117)||(4818457-4818548)
chr5 (60-97)||(7330435-7330472)
chr5 (65-117)||(6616034-6616086)
[»] chr7 (3 HSPs)
chr7 (60-118)||(6495091-6495149)
chr7 (60-118)||(43873836-43873894)
chr7 (58-118)||(38391665-38391725)
[»] chr2 (1 HSPs)
chr2 (60-101)||(7491078-7491119)
[»] chr1 (1 HSPs)
chr1 (60-101)||(6160604-6160645)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 173 - 334
Target Start/End: Complemental strand, 44654146 - 44653985
Alignment:
Q  173 gcagtagcaggttctaaacaatccccaacatttaccacctagatgaaaaccttcatagcgacaagtgttagcgcaatcttcactattgaaacacaactct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44654146 gcagtagcaggttctaaacaatccccaacatttaccacctagatgaaaaccttcatagcgacaagtgttagcgcaatcttcactattgaaacacaactct 44654047  T
Q  273 tcaaacagacgactcttttccctacaatgctttcgtccttcggtttgtaccaccatctctgc 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44654046 tcaaacagacgactcttttccctacaatgctttcgtccttcggtttgtaccaccatctctgc 44653985  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44654435 - 44654285
Alignment:
Q  1 ataatggcaaaagaaaaataa-ggtataatagtgatagaaaaataataaatgcggagtatattgatattttaaaatgtcaattattttgagacaaagaaa 99  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44654435 ataatggcaaaagaaaaataaaggtataatagtaatagagaaataataaatgcagagtatattgatattttaaaatgtcaattattttgagacaaagaaa 44654336  T
Q  100 aatcgctaaatagacaattgacggaaggagtataagagtggtactaccaac 150  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  44654335 aatcgctaaatagacaattgaaggaagaagtataagagtggtactaccaac 44654285  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 37773117 - 37773175
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaatt 118  Q
    |||| |||| |||| || |||||||||||||| |||||||||| |||||| ||||||||    
T  37773117 attggtattgtaaagtgacaattattttgagaaaaagaaaaattgctaaagagacaatt 37773175  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 26626264 - 26626322
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaatt 118  Q
    |||||||||||||| || |||||||||||||| |||||||||| | |||| ||||||||    
T  26626264 attgatattttaaagtgacaattattttgagaaaaagaaaaatggataaagagacaatt 26626322  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 8698306 - 8698215
Alignment:
Q  22 ggtataatagtgatagaaaaataataaatgcggagtatattgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaat 117  Q
    ||||||||||||  | ||||||||||||| |    || ||||||||| |||| || |||||||||||||| |||||||||| |||||| |||||||    
T  8698306 ggtataatagtggaaaaaaaataataaatac----tacattgatattgtaaagtgacaattattttgagaaaaagaaaaattgctaaagagacaat 8698215  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 41492223 - 41492180
Alignment:
Q  59 tattgatattttaaaatgtcaattattttgagacaaagaaaaat 102  Q
    |||||||||| |||| || |||||||||||||||||||||||||    
T  41492223 tattgatattctaaagtgacaattattttgagacaaagaaaaat 41492180  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 2588212 - 2588270
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaatt 118  Q
    ||||||||| |||| || |||||||||||||| |||||||||| | |||| ||||||||    
T  2588212 attgatattctaaagtgacaattattttgagaaaaagaaaaataggtaaagagacaatt 2588270  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 4818548 - 4818457
Alignment:
Q  22 ggtataatagtgatagaaaaataataaatgcggagtatattgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaat 117  Q
    ||||||||||||  | |||||||||||||||    || |||| |||| |||| || |||||||||||||| |||||||||| | |||| |||||||    
T  4818548 ggtataatagtgggaaaaaaataataaatgc----tacattggtattataaagtgacaattattttgagaaaaagaaaaattgttaaagagacaat 4818457  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 7330472 - 7330435
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaaga 97  Q
    |||||||||||||||||  |||||||||||||||||||    
T  7330472 attgatattttaaaatgataattattttgagacaaaga 7330435  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 6616034 - 6616086
Alignment:
Q  65 tattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaat 117  Q
    |||| |||| || |||||||||||||| |||||||||| |||||| |||||||    
T  6616034 tattgtaaagtgacaattattttgagaaaaagaaaaattgctaaagagacaat 6616086  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 6495091 - 6495149
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaatt 118  Q
    ||||||||| |||| || |||||||||||||| |||||||||| | |||| ||||||||    
T  6495091 attgatattctaaagtgacaattattttgagaaaaagaaaaatgggtaaagagacaatt 6495149  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 43873894 - 43873836
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaatt 118  Q
    ||||||||| |||| || |||||||||||||| |||||||||| | |||| ||||||||    
T  43873894 attgatattctaaagtgacaattattttgagaaaaagaaaaatggataaaaagacaatt 43873836  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 38391725 - 38391665
Alignment:
Q  58 atattgatattttaaaatgtcaattattttgagacaaagaaaaatcgctaaatagacaatt 118  Q
    ||||||||||| |||| || |||||||||||||| |||||||||  | |||| ||||||||    
T  38391725 atattgatattataaagtgacaattattttgagaaaaagaaaaaatggtaaagagacaatt 38391665  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 7491119 - 7491078
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaa 101  Q
    |||||||||||||| || |||||||||||||||| |||||||    
T  7491119 attgatattttaaagtgacaattattttgagacatagaaaaa 7491078  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 6160604 - 6160645
Alignment:
Q  60 attgatattttaaaatgtcaattattttgagacaaagaaaaa 101  Q
    ||||||||| ||||||| |||||||||||||||| |||||||    
T  6160604 attgatattctaaaatgacaattattttgagacagagaaaaa 6160645  T

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