View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_low_25 (Length: 338)
Name: NF6597_low_25
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 40215107 - 40215428
Alignment:
| Q |
17 |
attattctagttattttcgggggtaagtcaaaggtatgaaggcttttggtaaaatcaactcggcaaaagctgtgtttgatcacatttataaatttctcaa |
116 |
Q |
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| T |
40215107 |
attattctagttcttttcgggggtaagtcaaagatatgaaggcttttggtaaaatcaattccgcaaaagctgtgtttgatcacatttgtgaatttctcaa |
40215206 |
T |
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| Q |
117 |
tgatcttaaaggggaggtagggaagcatgaacaacactgtttcaagggaactgttccagttttggaggtattttgtcgaaccaacctttcacattattaa |
216 |
Q |
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| T |
40215207 |
tgatcttaaaggggaggtagggaagcatgaacaacactgtttctatggaactgctccagttttggaggtattttgtcgaaccaaccttttacattattaa |
40215306 |
T |
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| Q |
217 |
taatttcagctttgagcatttttctgtgcacatcgttcacatttgagattgtgttaggcactcatatatgaaaggatagcatagggcggtcgtcgaaact |
316 |
Q |
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| T |
40215307 |
taatttcagttttgagcatttttctatgcacatcgttcacatttgagattgtgttaggcattcatatatgaaaggataccattgtgcggtcgtcgaaact |
40215406 |
T |
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| Q |
317 |
ggaaaaactgacttctattttt |
338 |
Q |
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| T |
40215407 |
ggaaaaacgtacttcaattttt |
40215428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 40215613 - 40215536
Alignment:
| Q |
198 |
caacctttcacattattaataatttcagctttgagcatttttctgtgcacatcgttcacatttgagattgtgttaggc |
275 |
Q |
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| T |
40215613 |
caacttttcacaatattaataattttaattttgaacattttcctatacacatcgttcacatctaagactgtgttaggc |
40215536 |
T |
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