View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6597_low_4 (Length: 486)
Name: NF6597_low_4
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 28523392 - 28523086
Alignment:
| Q |
1 |
agagatgaaatcatttacagctagactttgagctaaatgtgtttgggatacaataggaaccagaatataataacttcaacttaaaagccaatggttcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28523392 |
agagatgaaatcatttacagctagactttgagctaaatgtgtttgggatacaataggaaccagaatataataacttcaacttaaaagccaatggttcaga |
28523293 |
T |
|
| Q |
101 |
gnnnnnnnnngaa--gatagacaagctatctatgattcctttaaattgaggttcatgttagatgcttctgtcaaaatacaaatatannnnnnnnnnnnnn |
198 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
28523292 |
gaaagaaaaaaaaaagatagacaagctatctatgattcctttaaattgaggttcatgttagatgcttccgtcaaaatacaactatatttttattttt--- |
28523196 |
T |
|
| Q |
199 |
gtaaaataaacattgtctcacaattttaactctcaattggttgtaaaaactataaaatgttgagaaaattgaaatattgttgactaatcctaaggagaag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28523195 |
gtaaaataaacattgtctcacaattttaactctcaattgattgtaaaaactataaaatgtagagaaaattgaaatattgttgactaatcctaaggagaag |
28523096 |
T |
|
| Q |
299 |
gaccaagatt |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
28523095 |
gaccaagatt |
28523086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 349 - 467
Target Start/End: Complemental strand, 28523016 - 28522900
Alignment:
| Q |
349 |
taatctcaaacacataaaacaattaacttaagaacgcttagatgatatgacacgagtcttttttaacttaatcaatgtcctaggttggaattcagaccta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
28523016 |
taatctcaaacacataaaacaattaactcaa-aacgcttagatgatatg-cacgagtctcttttaacttaatcaatgttctaggatggaattcagaccta |
28522919 |
T |
|
| Q |
449 |
aacatgcaatattgttaaa |
467 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28522918 |
aacatgcaatattgttaaa |
28522900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 18278458 - 18278416
Alignment:
| Q |
377 |
taagaacgcttagatgatatgacacgagtcttttttaacttaa |
419 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
18278458 |
taagaacgcttagatgaaatgacacaagtcatttttaacttaa |
18278416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 39401227 - 39401186
Alignment:
| Q |
378 |
aagaacgcttagatgatatgacacgagtcttttttaacttaa |
419 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
39401227 |
aagaacgtttagatgagatgacacgagtcttttttaacttaa |
39401186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 31346043 - 31346092
Alignment:
| Q |
377 |
taagaacgcttagatgatatgacacgagtcttttttaacttaatcaatgt |
426 |
Q |
| |
|
||||| || |||||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
31346043 |
taagagcgtttagatgagatgacacgagtctattctaacttaatcaatgt |
31346092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 6607852 - 6607808
Alignment:
| Q |
378 |
aagaacgcttagatgatatgacacgagtcttttttaacttaatca |
422 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
6607852 |
aagaacgcttagatgggatgacacgagtctcttctaacttaatca |
6607808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University