View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_low_5 (Length: 447)
Name: NF6597_low_5
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 69 - 431
Target Start/End: Original strand, 1432804 - 1433166
Alignment:
| Q |
69 |
ttattccacctggtttgattgcttgacatagcttctacacagattctatctttcctattacacaacacnnnnnnncttttcttctgaaattccatttttg |
168 |
Q |
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| T |
1432804 |
ttattccacctggtttgattgcttgacatagcttcttcacagattctatctttcctattacacaacacaaaaaaacttttcttctgaaattccatttttg |
1432903 |
T |
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| Q |
169 |
tcagtgatcaaactcatggtttcaaactgtggccgcgaacgcagttacgttgcaaacctttatattgcggcaaaatgcaaaaaatgcggttatggttctg |
268 |
Q |
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| T |
1432904 |
tcagtgatcaaactcatggtttcaaactgtggccgcgaacgcagttacgttgcaaacctttatattgcggcaaaatgcaaaaaatgcggttatggtgctg |
1433003 |
T |
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| Q |
269 |
ttgcggagacatcaaaatcatttatattgcggaccgcaatttaaaaccatgatcaaactcattgaaaacagaaaagaaagnnnnnnnncaatgtgaacac |
368 |
Q |
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| T |
1433004 |
ttgcggagacatcaaaatcatttatattgcggaccgcaatttaaaaccatgatcaaactcattgaaaacagaaaagaaagaaaaaaaacaatgtgaacac |
1433103 |
T |
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| Q |
369 |
aagaaaatcaatgaagacataaactcataatgaacatgaaacaaatgaaactgaactaaaaaa |
431 |
Q |
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| T |
1433104 |
aagaaaatcaatgaagacataaattcataaagaacatgaaacaaatgaaactgaactaaaaaa |
1433166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 37281172 - 37281138
Alignment:
| Q |
212 |
gttacgttgcaaacctttatattgcggcaaaatgc |
246 |
Q |
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| T |
37281172 |
gttacgctgcaaacctttatattgcggcaaaatgc |
37281138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 18573545 - 18573513
Alignment:
| Q |
212 |
gttacgttgcaaacctttatattgcggcaaaat |
244 |
Q |
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| T |
18573545 |
gttacgttgcaaacctttatattgcggtaaaat |
18573513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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