View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6597_low_8 (Length: 408)
Name: NF6597_low_8
Description: NF6597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6597_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 184 - 407
Target Start/End: Complemental strand, 41149346 - 41149121
Alignment:
| Q |
184 |
caaagtcattcataaaacttgataaaaa--tactttatatttaataaaatatgatcgagagggaagactccactaaagatgatcaatcaaattatcataa |
281 |
Q |
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| T |
41149346 |
caaagttattcataaaacttgataaaaaaatactttatatttgataaaatatgatagagagggaagactccactaaagatggtcaatcgaattatcataa |
41149247 |
T |
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| Q |
282 |
agacacaaatcattagcaatactttaacaatattaaatcattgttaaattttttagggaaaactttgccatcccatgagacccgatttaattaaaaaagg |
381 |
Q |
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| T |
41149246 |
agatacaaatcattagcaatactttaacaatattaaatcattgttaaattttttaggggaaactttgccatccgatgagacccgatttaattaaaaaagg |
41149147 |
T |
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| Q |
382 |
atgctccttaatccttatatatatat |
407 |
Q |
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| T |
41149146 |
atgctccttaatccttatatatatat |
41149121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 41149506 - 41149427
Alignment:
| Q |
27 |
taatggcctaaattctgatattcttgatgaagagtctcctcatttaatttttctgattcttcataaaatatggttttatt |
106 |
Q |
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| T |
41149506 |
taatggcctaaactctgttattcttgatgaagaccctcctcatttaatttttctgattcttcataaaatatggttttatt |
41149427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 41151936 - 41152000
Alignment:
| Q |
216 |
ttatatttaataaaatatgatcgagagggaagactccactaaagatgatcaatcaaattatcataaa |
282 |
Q |
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| T |
41151936 |
ttatatttgataaaatatgattgagag--aagactccactaaagatggtcaatcaaattatcctaaa |
41152000 |
T |
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