View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6598_high_3 (Length: 484)
Name: NF6598_high_3
Description: NF6598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6598_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 1686886 - 1687348
Alignment:
| Q |
7 |
gaagcataggaaaagttatgttagaaagagtgctaagacttctgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttg |
106 |
Q |
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| T |
1686886 |
gaagcagaggaaaagttatgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttg |
1686985 |
T |
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| Q |
107 |
gaaaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatatgctatcgaatacaattcactacaaagttaccaaa |
206 |
Q |
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| T |
1686986 |
ttaaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatctgctatcgaatacaattcactacaaagttaccaaa |
1687085 |
T |
|
| Q |
207 |
aaatgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaat |
306 |
Q |
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| T |
1687086 |
aaatgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaat |
1687185 |
T |
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| Q |
307 |
aaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaat |
406 |
Q |
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| T |
1687186 |
aaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaat |
1687285 |
T |
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| Q |
407 |
tctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcgaataaaaaa |
469 |
Q |
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| T |
1687286 |
tctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcaaataaaaaa |
1687348 |
T |
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Back To:
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Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 469
Target Start/End: Original strand, 41918017 - 41918469
Alignment:
| Q |
14 |
aggaaaagttatgttagaaagagtgctaagacttctgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttggaaaatt |
113 |
Q |
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|||||||||||||||||||||| ||| |||| | ||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||| ||| |
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| T |
41918017 |
aggaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatt |
41918116 |
T |
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| Q |
114 |
tcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatatgctatcgaatacaattcactacaaagttaccaaaaaatgac |
213 |
Q |
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| T |
41918117 |
tcaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtc |
41918216 |
T |
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| Q |
214 |
ttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaataaatttg |
313 |
Q |
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| T |
41918217 |
ttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaagagaaagaataagtttg |
41918316 |
T |
|
| Q |
314 |
gtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaattctacta |
413 |
Q |
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|||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||| |||||||||| | | || | | ||||||||||| ||| |
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| T |
41918317 |
gtaaaactcttgcccccgtttgcaaagggccagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggcagaaggaaatt---cta |
41918413 |
T |
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| Q |
414 |
caatcagccgaaaaatgaaaactataatcaagaagattatttcctcgaataaaaaa |
469 |
Q |
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||| |||||||||||||| | || |||||||||| |||||||||| ||| |||||| |
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| T |
41918414 |
caaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagaaaaaa |
41918469 |
T |
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