View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6598_high_5 (Length: 384)
Name: NF6598_high_5
Description: NF6598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6598_high_5 |
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| [»] scaffold0042 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 10865503 - 10865156
Alignment:
| Q |
21 |
ttattattgctaaaattgattgtgcttgagctttatggaatttgaatagaaatttgtatgacagtacaggtgataatcggattactgctatttctgtgtt |
120 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10865503 |
ttattattgctaaaagtgattgtgcttgagctttatggaatttgaatagaaatttgtatgacagtacaggtgataatcggattactgctatttctgtgtt |
10865404 |
T |
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| Q |
121 |
gatcaaagttaagtggttattagatatttggattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaa |
220 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10865403 |
gatcaaagttaagtgattattagatatttggattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaa |
10865304 |
T |
|
| Q |
221 |
aacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataactctcttagtgtcattcggatt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
10865303 |
aacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggcaataactctcttactgtcattcggatt |
10865204 |
T |
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| Q |
321 |
caagcggttgttgtggctacggataactaatgcaattccggacgtttt |
368 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
10865203 |
caagcggttgttgtggctatggataactaatgcaattcccgacgtttt |
10865156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 164 - 359
Target Start/End: Complemental strand, 14191470 - 14191275
Alignment:
| Q |
164 |
attcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacg |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
14191470 |
attcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttgaagtttggtaatttctgctgaattctggttacg |
14191371 |
T |
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| Q |
264 |
gattttggaacagggctccaccgaaacggatataactctcttagtgtcattcggattcaagcggttgttgtggctacggataactaatgcaattcc |
359 |
Q |
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|||||||||||||||||| |||||||| | | |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14191370 |
gattttggaacagggctctaccgaaacagcaagaactctcttactgtgattcggattcaagcggttgttgtggctacggatagctaatgcaattcc |
14191275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 24627755 - 24627703
Alignment:
| Q |
197 |
ttcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgct |
249 |
Q |
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|||||| ||||||| ||||| ||||||| |||||||||||||||||| |||| |
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| T |
24627755 |
ttcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgct |
24627703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 368
Target Start/End: Complemental strand, 19244926 - 19244775
Alignment:
| Q |
217 |
ggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataactctcttagtgtcattcg |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||| ||||| |
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| T |
19244926 |
ggaaaacatgtttaaagtttggtaatttctgctggattctggttacggattttggaacatggctccaccgaaacggcaagaactctcttactgtgattcg |
19244827 |
T |
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| Q |
317 |
gattcaagcggttgttgtggctacggataactaatgcaattccggacgtttt |
368 |
Q |
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|||||||||||||||||||||||| |||| ||||| ||||||| |||||||| |
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| T |
19244826 |
gattcaagcggttgttgtggctaccgatagctaattcaattcccgacgtttt |
19244775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 8910 - 9026
Alignment:
| Q |
164 |
attcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacg |
263 |
Q |
| |
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||||||||||| ||||||| ||||||| | ||||||||||||||||||||||| ||||||||| || ||||| || |||||||||||| || ||||| |
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| T |
8910 |
attcccttcaaatcggatacaagtttcgtacgattcggaataggaatgaattcggtaaacatgttcgaaatttggtaaattctgctggattttgtttacg |
9009 |
T |
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| Q |
264 |
gattttggaacagggct |
280 |
Q |
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| T |
9010 |
ggttttgggactgggct |
9026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 7015 - 7118
Alignment:
| Q |
201 |
gaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataact |
300 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| || |||||||||||| || |||||| |||||| || ||||| | | ||| || ||||||| |
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| T |
7015 |
gaatagaaatgaattcggaaaacatgtttgaagtttgctaaattctgctggattttgtttacgggttttgggaccgggcttcgctaaaatggttataact |
7114 |
T |
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| Q |
301 |
ctct |
304 |
Q |
| |
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|||| |
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| T |
7115 |
ctct |
7118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 14427 - 14530
Alignment:
| Q |
201 |
gaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataact |
300 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| || |||||||||||| || |||||| |||||| || ||||| | | ||| || ||||||| |
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| T |
14427 |
gaatagaaatgaattcggaaaacatgtttgaagtttgctaaattctgctggattttgtttacgggttttgggaccgggcttcgctaaaatggttataact |
14526 |
T |
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| Q |
301 |
ctct |
304 |
Q |
| |
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|||| |
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| T |
14527 |
ctct |
14530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 17302860 - 17302961
Alignment:
| Q |
151 |
gattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctg |
250 |
Q |
| |
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|||||||||| | |||||||||||||||||||||| ||| | | ||||||| ||| ||||||||| |||||||| || |||||||| || ||||| || |
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| T |
17302860 |
gattctacgttcaattcccttcaattcggatataaattttgtatgattcggattagaaatgaattcagaaaacatattcgaagtttggtaaattctgttg |
17302959 |
T |
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| Q |
251 |
ga |
252 |
Q |
| |
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|| |
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| T |
17302960 |
ga |
17302961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 11825666 - 11825574
Alignment:
| Q |
129 |
ttaagtggttattagatatttggattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaa |
221 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| ||| || ||| ||||||| |
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| T |
11825666 |
ttaagtgattattggatatttggattctacgcttaattcccttcaattcgaatataagttttgtgtgattcggactagaaacgaactcggaaa |
11825574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 10214655 - 10214759
Alignment:
| Q |
117 |
tgttgatcaaagttaagtggttattagatatttggattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattc |
216 |
Q |
| |
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||||||||| | |||||| |||| ||||||| |||||||||| |||||||||||||||||||||| |||| | | ||||||| ||| || | |||| |
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| T |
10214655 |
tgttgatcagaattaagtaactattggatatttagattctacgtttaattcccttcaattcggatataaatttcgtatgattcggattagaaacggattc |
10214754 |
T |
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| Q |
217 |
ggaaa |
221 |
Q |
| |
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||||| |
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| T |
10214755 |
ggaaa |
10214759 |
T |
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Back To:
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