View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6598_low_1 (Length: 780)
Name: NF6598_low_1
Description: NF6598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6598_low_1 |
 | |
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| [»] scaffold0042 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 267 - 764
Target Start/End: Complemental strand, 10865653 - 10865156
Alignment:
| Q |
267 |
tcttttctcattttgttcaagagatttgattcatgtgagtttcgaatgctcaaaagtgttgtgttggattttaggggctcaagctagagaattgacaagg |
366 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10865653 |
tcttttctcattttgttcaagagatttgattcatgtgagtttcgaatgctcaaaagtgttgtgttggattttaggggctcaagctagaggattgacaagg |
10865554 |
T |
|
| Q |
367 |
aataaggctgtggttaatctaggtaaggttgagtggttgatcaaaatgagttattattgctaaaattgattgtgcttgagctttatggaatttgaataga |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10865553 |
aataaggctgtggttaatctaggtaaggttgagtggttgctcaaaatgagttattattgctaaaagtgattgtgcttgagctttatggaatttgaataga |
10865454 |
T |
|
| Q |
467 |
aatttgtatgacagtacaggtgataatcggattactgctatttctgtgttgatcaaagttaagtggttattagatatttggattctacgtcccattccct |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10865453 |
aatttgtatgacagtacaggtgataatcggattactgctatttctgtgttgatcaaagttaagtgattattagatatttggattctacgtcccattccct |
10865354 |
T |
|
| Q |
567 |
tcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttg |
666 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10865353 |
tcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttg |
10865254 |
T |
|
| Q |
667 |
gaacagggctccaccgaaacggatataactctcttagtgtcattcggattcaagcggttgttgtggctacggataactaatgcaattccggacgtttt |
764 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
10865253 |
gaacagggctccaccgaaacggcaataactctcttactgtcattcggattcaagcggttgttgtggctatggataactaatgcaattcccgacgtttt |
10865156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 10865967 - 10865697
Alignment:
| Q |
1 |
tcatcaatttcatctaacactcaaataatcaacatgcaatggtgtttatatgatccttgaattatctacatgtgaagcatgctgaattttctccctctct |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10865967 |
tcatcaatttcatctaacaatcaaataatcaacatgcaatggtgtttatatgatccttgaattatctagatgtgaagcatgctgaattttctccctctct |
10865868 |
T |
|
| Q |
101 |
tccactttggccgaacccaaacccttcattcccattcatttcctttccttcacttctgttagcatgagaggaaggcaaggcatgggttttggagcttaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10865867 |
tccactttggccgaacccaaacccttcattccaattcattttctttccttcacttctgttagcatgagaggaaggcaaggcatgggttttggagcttaat |
10865768 |
T |
|
| Q |
201 |
cttgaggatgcatgttgttgagtaacaagaagttaaggtaagctaataaattcattatcatccctttcttt |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10865767 |
cttgaggatgcatgttgttgagtaacaagaagttaaggtaagctaataaattcattatcatccctttcttt |
10865697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 560 - 755
Target Start/End: Complemental strand, 14191470 - 14191275
Alignment:
| Q |
560 |
attcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacg |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
14191470 |
attcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttgaagtttggtaatttctgctgaattctggttacg |
14191371 |
T |
|
| Q |
660 |
gattttggaacagggctccaccgaaacggatataactctcttagtgtcattcggattcaagcggttgttgtggctacggataactaatgcaattcc |
755 |
Q |
| |
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|||||||||||||||||| |||||||| | | |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14191370 |
gattttggaacagggctctaccgaaacagcaagaactctcttactgtgattcggattcaagcggttgttgtggctacggatagctaatgcaattcc |
14191275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 8e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 613 - 764
Target Start/End: Complemental strand, 19244926 - 19244775
Alignment:
| Q |
613 |
ggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataactctcttagtgtcattcg |
712 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||| ||||| |
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| T |
19244926 |
ggaaaacatgtttaaagtttggtaatttctgctggattctggttacggattttggaacatggctccaccgaaacggcaagaactctcttactgtgattcg |
19244827 |
T |
|
| Q |
713 |
gattcaagcggttgttgtggctacggataactaatgcaattccggacgtttt |
764 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||| |
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| T |
19244826 |
gattcaagcggttgttgtggctaccgatagctaattcaattcccgacgtttt |
19244775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 676
Target Start/End: Original strand, 8910 - 9026
Alignment:
| Q |
560 |
attcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacg |
659 |
Q |
| |
|
||||||||||| ||||||| ||||||| | ||||||||||||||||||||||| ||||||||| || ||||| || |||||||||||| || ||||| |
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| T |
8910 |
attcccttcaaatcggatacaagtttcgtacgattcggaataggaatgaattcggtaaacatgttcgaaatttggtaaattctgctggattttgtttacg |
9009 |
T |
|
| Q |
660 |
gattttggaacagggct |
676 |
Q |
| |
|
| |||||| || ||||| |
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|
| T |
9010 |
ggttttgggactgggct |
9026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 700
Target Start/End: Original strand, 7015 - 7118
Alignment:
| Q |
597 |
gaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataact |
696 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| || |||||||||||| || |||||| |||||| || ||||| | | ||| || ||||||| |
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|
| T |
7015 |
gaatagaaatgaattcggaaaacatgtttgaagtttgctaaattctgctggattttgtttacgggttttgggaccgggcttcgctaaaatggttataact |
7114 |
T |
|
| Q |
697 |
ctct |
700 |
Q |
| |
|
|||| |
|
|
| T |
7115 |
ctct |
7118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 700
Target Start/End: Original strand, 14427 - 14530
Alignment:
| Q |
597 |
gaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctggattctggttacggattttggaacagggctccaccgaaacggatataact |
696 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| || |||||||||||| || |||||| |||||| || ||||| | | ||| || ||||||| |
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|
| T |
14427 |
gaatagaaatgaattcggaaaacatgtttgaagtttgctaaattctgctggattttgtttacgggttttgggaccgggcttcgctaaaatggttataact |
14526 |
T |
|
| Q |
697 |
ctct |
700 |
Q |
| |
|
|||| |
|
|
| T |
14527 |
ctct |
14530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 547 - 648
Target Start/End: Original strand, 17302860 - 17302961
Alignment:
| Q |
547 |
gattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctg |
646 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||| | | ||||||| ||| ||||||||| |||||||| || |||||||| || ||||| || |
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|
| T |
17302860 |
gattctacgttcaattcccttcaattcggatataaattttgtatgattcggattagaaatgaattcagaaaacatattcgaagtttggtaaattctgttg |
17302959 |
T |
|
| Q |
647 |
ga |
648 |
Q |
| |
|
|| |
|
|
| T |
17302960 |
ga |
17302961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 617
Target Start/End: Complemental strand, 11825666 - 11825574
Alignment:
| Q |
525 |
ttaagtggttattagatatttggattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaa |
617 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| ||| || ||| ||||||| |
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| T |
11825666 |
ttaagtgattattggatatttggattctacgcttaattcccttcaattcgaatataagttttgtgtgattcggactagaaacgaactcggaaa |
11825574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 617
Target Start/End: Original strand, 10214655 - 10214759
Alignment:
| Q |
513 |
tgttgatcaaagttaagtggttattagatatttggattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattc |
612 |
Q |
| |
|
||||||||| | |||||| |||| ||||||| |||||||||| |||||||||||||||||||||| |||| | | ||||||| ||| || | |||| |
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|
| T |
10214655 |
tgttgatcagaattaagtaactattggatatttagattctacgtttaattcccttcaattcggatataaatttcgtatgattcggattagaaacggattc |
10214754 |
T |
|
| Q |
613 |
ggaaa |
617 |
Q |
| |
|
||||| |
|
|
| T |
10214755 |
ggaaa |
10214759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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