View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6598_low_2 (Length: 580)
Name: NF6598_low_2
Description: NF6598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6598_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 17 - 580
Target Start/End: Original strand, 51717310 - 51717872
Alignment:
| Q |
17 |
tgagcaaaggagtcaggtatttggcgatgatgccaagttcttggttgaggtaaaatctggtcaaattgaagcaagtttgaatccagaccgagaacttaga |
116 |
Q |
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| T |
51717310 |
tgagcaaaggagtcaagtatttggcgatgatgccaagttcttggttgaggtaaaatctggtcaaattgaagcaagtttgaatccagaccgagaacttaga |
51717409 |
T |
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| Q |
117 |
aggttaaaacaaatgtttgaaggttggaaaaaggactatgccgcaagactgcgtgaaacaaaggttattttaaataaacttggaagtgaagatggttcca |
216 |
Q |
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| T |
51717410 |
aggttaaaacaaatgtttgaaggttggaaaaaggactatgccgcaagactgcgtgaaacaaaggttattttaaataaacttggaagtgaagatggttcca |
51717509 |
T |
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| Q |
217 |
tagagaaagccaagaagaagtggtggggaagaaggaacagtactaggatgagttaatttatttattaattttttccttttggggtttgaccttggtccat |
316 |
Q |
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| T |
51717510 |
tagagaaagccaagaagaagtggtggggaagaaggaacagtactaggatgagttaatttatttattaattttttccttttggggtttggccttggtccat |
51717609 |
T |
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| Q |
317 |
gcactgtattaagggcattgccaactatatattgaaaatgaggaaaatacaacaggaaaaatgagatagcagtaggaagtgtctaaggatgaatgaatta |
416 |
Q |
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| T |
51717610 |
gcactgtattaagggcattgccaactatatattg-aaatgaggaaaatacaacaggaaaaatgagatagcagtaggaagtgtctaaggatgaatgaatta |
51717708 |
T |
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| Q |
417 |
tttattgtaattaggttagctgctgctagccatgtttatttatcagaaatttggaatttctgctagatttgtgtacaaaaaatttacattatcaattgat |
516 |
Q |
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| T |
51717709 |
tttattgtaattaggttagctgctgctagccatgtttatttatcagaaatttggaatttctgctagatttgtgtacaaaaaatttacattatcaattgat |
51717808 |
T |
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| Q |
517 |
atacttcaagtgggtataaacttttgttgctttaaataaactgtgtgagaataataatgataca |
580 |
Q |
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| T |
51717809 |
atacttcaagtgggtataaacttttgttgctttaaataaactgtgtgagaataataatgataca |
51717872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 14311418 - 14311666
Alignment:
| Q |
17 |
tgagcaaaggagtcaggtatttggcgatgatgccaagttcttggttgaggtaaaatctggtcaaattgaagcaagtttgaatccagaccgagaacttaga |
116 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
14311418 |
tgagcaaaggagtcaagtatttggtgatgatgccaagttcttagttgaggtaaaatctggtcaagcagaagcaagtttgaatccagatcaagaacttaga |
14311517 |
T |
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| Q |
117 |
aggttaaaacaaatgtttgaaggttggaaaaaggactatgccgcaagactgcgtgaaacaaaggttattttaaataaacttggaagtgaagatggttcca |
216 |
Q |
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| T |
14311518 |
aggctaaaacagatgtttgaagcttggaaaagggattacggggcaagattgcgtgaaacaaagttaattataaataaacttggaactgaagatagtgcac |
14311617 |
T |
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| Q |
217 |
tagagaaagccaagaagaagtggtggggaagaaggaacagtactaggat |
265 |
Q |
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| T |
14311618 |
ttgagaaaatgaagaaaaagtggtggggaagaaggaacagtacaaggat |
14311666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 7589778 - 7589717
Alignment:
| Q |
20 |
gcaaaggagtcaggtatttggcgatgat-gccaagttcttggttgaggtaaaatctggtcaa |
80 |
Q |
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| T |
7589778 |
gcaaaggagtcaagtatttggtgacgattgccaagttcttggttgaggtgaaatctggtcaa |
7589717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 7589715 - 7589567
Alignment:
| Q |
110 |
acttagaaggttaaaacaaatgtttgaaggttggaaaaaggactatgccgcaagactgcgtgaaacaaaggttattttaaataaacttggaagtgaagat |
209 |
Q |
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| T |
7589715 |
acttagaaggctaaaacagatgtttgaagcttggaaaagggattacagggcaaggttgcgtgaaacgaagttgattataaataaacttggaactgaagac |
7589616 |
T |
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| Q |
210 |
ggttccatagagaaagccaagaagaagtggtggggaagaaggaacagta |
258 |
Q |
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| T |
7589615 |
agtgcacttgagaaaatgaagaaaaagtggtggggatgaaggaatagta |
7589567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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