View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6598_low_6 (Length: 330)
Name: NF6598_low_6
Description: NF6598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6598_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 34094282 - 34093961
Alignment:
| Q |
9 |
agcaaaggtcctaacaaaattctcaataaaatgttataacaatttttaataaagataatataactaaaaatcaatcaattaaaccttaaatatttagttt |
108 |
Q |
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| T |
34094282 |
agcaaaggtcctaacaaaattctcaataaaatgttataacaatttttaataaagataatataactaaaaatcaatcaattaaaccttaaatatttagttt |
34094183 |
T |
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| Q |
109 |
gtgttaatgaaccaacactatagttattaggcctaagagtcaaaccaattgaacctccacagtccattttagattttgaccattggggtgagttgaaact |
208 |
Q |
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| T |
34094182 |
gtgttaatgaaccaacactatagttattaggtctaagagtcaaatcaattgaacctccgcagtccattttagattttgaccattggggtgagttgaaact |
34094083 |
T |
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| Q |
209 |
tgaaagaaacaattaggaatgaattcaaccaaacaattttgattnnnnnnnntgaattcacatttaaccgagtgcgactggttcaagagtggtnnnnnnn |
308 |
Q |
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|||||||||||||||||||||| || ||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
34094082 |
tgaaagaaacaattaggaatgagtttaaccaaacaattttggttaaaaaaaatgaattcatatttaaccgagtgcgactggttcaagggtggtaaaaaaa |
34093983 |
T |
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| Q |
309 |
cataagtataaactctttctcc |
330 |
Q |
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|||||||||||||||||||||| |
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| T |
34093982 |
cataagtataaactctttctcc |
34093961 |
T |
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