View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6598_low_8 (Length: 244)
Name: NF6598_low_8
Description: NF6598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6598_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 46641620 - 46641741
Alignment:
| Q |
24 |
tgaatactaaataaagcgggcagaggtggtagcgtttgcttggaaggcacttcgtagccagatagcaacaaaagataaccttatgttaaggaatgtcctt |
123 |
Q |
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| T |
46641620 |
tgaatactaaataaagcgggcagaggtggtggcgtttgcttggaaggcacttcttaatcggatagcaacaaaatataaccttgtgttaaggaatgtcctt |
46641719 |
T |
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| Q |
124 |
ccaatggagtcttcaaatttgt |
145 |
Q |
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| T |
46641720 |
ccaatggagtcttcaaatttgt |
46641741 |
T |
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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 13854076 - 13854258
Alignment:
| Q |
49 |
gtggtagcgtttgcttggaaggcacttcgtagccagatagcaacaaaagataaccttatgttaaggaatgtccttccaatggagtcttcaaatttgtgtg |
148 |
Q |
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| T |
13854076 |
gtggtggcgtttacttggaaggcacttcgtaaccggatagcaacaaaagataacctcgtgattaggaatgttattccaccggaggcctcaaatttgtgtg |
13854175 |
T |
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| Q |
149 |
tcttgtgcaatagggtcgaagaatcaacgcgtcaccttttattacattgtgatgaggttgcgaggtcggtttggttgagattgatg |
234 |
Q |
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| T |
13854176 |
tcttgtgtaatagggatgaagaatcaacgtgtcacctatttctacattg---tgaggtggtgaggtcggtttggttgagattgatg |
13854258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 40754053 - 40753871
Alignment:
| Q |
49 |
gtggtagcgtttgcttggaaggcacttcgtagccagatagcaacaaaagataaccttatgttaaggaatgtccttccaatggagtcttcaaatttgtgtg |
148 |
Q |
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| T |
40754053 |
gtggtggcgtttgcttggaaggcactccgtaaccggatagctacaaaagataaccttgtgttaaggaacgttcttccaccggaggcttccattttgtgtg |
40753954 |
T |
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| Q |
149 |
tcttgtgcaatagggtcgaagaatcaacgcgtcaccttttattacattgtgatgaggttgcgaggtcggtttggttgagattgatg |
234 |
Q |
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| T |
40753953 |
ttttgtgcaatagggatgaggaatcctcaagtcatctttttttacattgtgaagtggt---gaggtcggtttggttgagattgatg |
40753871 |
T |
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