View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6599_high_1 (Length: 467)

Name: NF6599_high_1
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6599_high_1
NF6599_high_1
[»] chr8 (13 HSPs)
chr8 (13-275)||(29160171-29160433)
chr8 (276-448)||(39254787-39254960)
chr8 (335-448)||(12351121-12351237)
chr8 (276-421)||(62144-62288)
chr8 (276-448)||(44752451-44752618)
chr8 (335-421)||(1366517-1366603)
chr8 (335-417)||(216451-216533)
chr8 (335-417)||(693011-693093)
chr8 (335-417)||(697220-697302)
chr8 (335-417)||(730074-730156)
chr8 (335-417)||(853969-854051)
chr8 (415-448)||(62058-62091)
chr8 (415-448)||(1366431-1366464)
[»] chr5 (3 HSPs)
chr5 (275-421)||(13654932-13655077)
chr5 (411-448)||(13655129-13655166)
chr5 (335-377)||(4553787-4553829)
[»] chr6 (1 HSPs)
chr6 (276-417)||(9574479-9574619)
[»] chr4 (10 HSPs)
chr4 (335-421)||(28684136-28684222)
chr4 (335-421)||(47199299-47199385)
chr4 (335-416)||(55159238-55159319)
chr4 (335-417)||(43738381-43738463)
chr4 (339-417)||(47524104-47524181)
chr4 (411-448)||(28684047-28684084)
chr4 (411-448)||(47199210-47199247)
chr4 (191-242)||(39624195-39624246)
chr4 (274-316)||(47198603-47198645)
chr4 (276-316)||(25371553-25371593)
[»] chr1 (6 HSPs)
chr1 (335-417)||(37874869-37874951)
chr1 (275-389)||(35616710-35616824)
chr1 (335-389)||(48870689-48870743)
chr1 (335-387)||(17494470-17494522)
chr1 (267-316)||(48869760-48869809)
chr1 (276-316)||(37874064-37874104)
[»] scaffold1037 (1 HSPs)
scaffold1037 (336-417)||(2807-2888)
[»] scaffold1031 (1 HSPs)
scaffold1031 (336-417)||(2926-3007)
[»] chr2 (4 HSPs)
chr2 (340-417)||(5277303-5277380)
chr2 (339-417)||(36475841-36475917)
chr2 (270-316)||(5276459-5276505)
chr2 (191-253)||(28104999-28105061)
[»] chr3 (2 HSPs)
chr3 (335-389)||(17227884-17227938)
chr3 (204-253)||(24094287-24094336)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 29160171 - 29160433
Alignment:
Q  13 aaaatctaagtttagtttgtaacctacaaagattaccccaaaacttgataagtcaaattatggatggtgttgaccgacaaaatatctgaacaaaattctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||    
T  29160171 aaaatctaagtttagtttgtaacctacaaagattaccccaaaacctgataagtcaaatcatggatggtgttgactgacaaaatatctgaacaaaatcctt 29160270  T
Q  113 catacatacatgtaatggtcaaatcatctgtcatgtgactcttaatgagctaagtagacatgtcagatggaaataacggattctatgaacaaactgataa 212  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29160271 caaacatacatgtaatggtcaaaccatctgtcatgtgactcttaatgagctaagtagacatgtcagatggaaataacggattctatgaacaaactgataa 29160370  T
Q  213 aattcaagtctcaaatgtagggattctaataattttgaataaaagaatccaatacaaaagaga 275  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29160371 aattcaagtctcaaatgtagggattctaataattttgaatagaagaatccaatacaaaagaga 29160433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 276 - 448
Target Start/End: Original strand, 39254787 - 39254960
Alignment:
Q  276 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 375  Q
    |||| ||||||| ||| ||||| |||||||||||||||||||| || |||         | |||||||||||||||||||| ||||||||||||||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagtctttttttt-atcattagattgagtagtaccatcattgttattatagtcta 39254885  T
Q  376 tccacat--tatatttgcttcacatcatctctaaccttaacaacaacaacacactcttctctccttcgaaaatca 448  Q
    ||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39254886 tccacacactatattttcttcacatcatctctaaccttaacaacaacaacacactcttctctcctttgaaaatca 39254960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 335 - 448
Target Start/End: Original strand, 12351121 - 12351237
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaacaac---acactctt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||   ||||||||    
T  12351121 accattagattgagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatttctaaacttaacaacaacaacaaaacactctt 12351220  T
Q  432 ctctccttcgaaaatca 448  Q
    |||||||| ||||||||    
T  12351221 ctctccttagaaaatca 12351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 276 - 421
Target Start/End: Complemental strand, 62288 - 62144
Alignment:
Q  276 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 375  Q
    |||||||||||| ||||||||| |||||||||||||||||||| || |||         | |||||||||||||||||||||||||||||||||||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagtcattttttt-atcattagattgagtagtaccaccattgttattatagtcta 62190  T
Q  376 tccacattatatttgcttcacatcatctctaaccttaacaacaaca 421  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||    
T  62189 tccacactatattttcttcacatcatctctaaccttaacatcaaca 62144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 276 - 448
Target Start/End: Complemental strand, 44752618 - 44752451
Alignment:
Q  276 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 375  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| ||  ||         ||||||| |||||||||||||||||||||||||||||||||    
T  44752618 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaaatctttttttt-accattaaattgagtagtaccaccattgttattatagtcta 44752520  T
Q  376 tccacattatatttgcttcacatcatctctaaccttaacaacaacaacacactcttctctccttcgaaaatca 448  Q
    |||||| ||||||| |||||||||||||||||||||||||||   ||||||||| ||||||||| ||||||||    
T  44752519 tccacactatattttcttcacatcatctctaaccttaacaac---aacacactc-tctctcctttgaaaatca 44752451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 1366603 - 1366517
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  1366603 accattagattgagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatctctaaccttaacatcaaca 1366517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 216451 - 216533
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  216451 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 216533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 693011 - 693093
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  693011 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 693093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 697220 - 697302
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  697220 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 697302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 730074 - 730156
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  730074 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 730156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 853969 - 854051
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  853969 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 854051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 62091 - 62058
Alignment:
Q  415 aacaacaacacactcttctctccttcgaaaatca 448  Q
    ||||||||||||||||||||||||||||||||||    
T  62091 aacaacaacacactcttctctccttcgaaaatca 62058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 1366464 - 1366431
Alignment:
Q  415 aacaacaacacactcttctctccttcgaaaatca 448  Q
    ||||||||||||||||||||||||||||||||||    
T  1366464 aacaacaacacactcttctctccttcgaaaatca 1366431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 275 - 421
Target Start/End: Original strand, 13654932 - 13655077
Alignment:
Q  275 aggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtct 374  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||| || |||         ||||||||||||||||||||||||||||||||||||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagtctttttttt-accattagattgagtagtaccaccattgttattatagtct 13655030  T
Q  375 atccacattatatttgcttcacatcatctctaaccttaacaacaaca 421  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  13655031 atccacactatattttcttcacatcatctctaaccttaacatcaaca 13655077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 13655129 - 13655166
Alignment:
Q  411 taacaacaacaacacactcttctctccttcgaaaatca 448  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13655129 taacaacaacaacacactcttctctccttcgaaaatca 13655166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 4553787 - 4553829
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatc 377  Q
    |||||| |||| |||||||||| ||||||||||||||||||||    
T  4553787 accatttgattaagtagtaccatcattgttattatagtctatc 4553829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 9574619 - 9574479
Alignment:
Q  276 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 375  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| || |||         ||||||| |||||||||||||||||||||||||||||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagtctttttttt-accattaaattgagtagtaccaccattgttattatagtcta 9574521  T
Q  376 tccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  9574520 tccacactatattttcttcacatcatctctaaccttaacaac 9574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 28684222 - 28684136
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 421  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||    
T  28684222 accattagattgagtagtaccaccattgttattatagtctagccacactatattttcttcacatcatctctaaccttaacatcaaca 28684136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 47199385 - 47199299
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||| |||||    
T  47199385 accattagattgagtagtaccaccattgttattatagtctatccacacaatattttctttacatcatctctaaccttaacatcaaca 47199299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 55159238 - 55159319
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaa 416  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  55159238 accattagattgagtagtaccaccattattattatagtctatccacactataatttcttcacatcatctctaaccttaacaa 55159319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 43738463 - 43738381
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||  ||||||| |||| |||||||||||||    
T  43738463 accattagattgagtagtaccaccattattactatagtctatccacactctatttttttcacataatctttaaccttaacaac 43738381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 47524181 - 47524104
Alignment:
Q  339 ttagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||||||| ||||| ||||||||||||    
T  47524181 ttagattgagtagtaccaccattgttattatagcctatccacactatattt-tttcacattatctccaaccttaacaac 47524104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 28684084 - 28684047
Alignment:
Q  411 taacaacaacaacacactcttctctccttcgaaaatca 448  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28684084 taacaacaacaacacactcttctctccttcgaaaatca 28684047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 47199247 - 47199210
Alignment:
Q  411 taacaacaacaacacactcttctctccttcgaaaatca 448  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47199247 taacaacaacaacacactcttctctccttcgaaaatca 47199210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 39624246 - 39624195
Alignment:
Q  191 gattctatgaacaaactgataaaattcaagtctcaaatgtagggattctaat 242  Q
    ||||||||| || ||| ||||||||  |||||||||||||||||||||||||    
T  39624246 gattctatggacgaacagataaaatataagtctcaaatgtagggattctaat 39624195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 47198603 - 47198645
Alignment:
Q  274 gaggtgacatttaacttgagaaagaagacttctttcccaccat 316  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  47198603 gaggtgacatttaatttgggaaaggagacttctttcccaccat 47198645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 25371593 - 25371553
Alignment:
Q  276 ggtgacatttaacttgagaaagaagacttctttcccaccat 316  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccat 25371553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 37874951 - 37874869
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37874951 accattagattgattagtaccatcattgttattatagtctatccacactatattttcttcacatcatctctaaccttaacaac 37874869  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 389
Target Start/End: Complemental strand, 35616824 - 35616710
Alignment:
Q  275 aggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtct 374  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| | || |||         ||||||||||||||||||||||||||||||||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtctttttttttaccattagattgagtagtaccaccattgttattatagtct 35616725  T
Q  375 atccacattatattt 389  Q
    ||||||| |||||||    
T  35616724 atccacactatattt 35616710  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 48870743 - 48870689
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatattt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48870743 accattagattgagtagtaccaccattgttattatagtctatccacactatattt 48870689  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 17494470 - 17494522
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatat 387  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  17494470 accattagattgaatagtaccaccattgttattatagtctatccacactatat 17494522  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 48869760 - 48869809
Alignment:
Q  267 caaaagagaggtgacatttaacttgagaaagaagacttctttcccaccat 316  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  48869760 caaaagagaggtgacatttaacttgggaaaggagacttcttttccaccat 48869809  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 37874064 - 37874104
Alignment:
Q  276 ggtgacatttaacttgagaaagaagacttctttcccaccat 316  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccat 37874104  T

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Target: scaffold1037 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 2888 - 2807
Alignment:
Q  336 ccattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||||    
T  2888 ccattagattgagtagtaccaccattgttattatagtctatccacactctatttttttcgcatcatctctaaccttaacaac 2807  T

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Target: scaffold1031 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 3007 - 2926
Alignment:
Q  336 ccattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||||    
T  3007 ccattagattgagtagtaccaccattgttattatagtctatccacactctatttttttcgcatcatctctaaccttaacaac 2926  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 5277380 - 5277303
Alignment:
Q  340 tagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  5277380 tagattaagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatctccaaccttaacaac 5277303  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 36475841 - 36475917
Alignment:
Q  339 ttagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||    
T  36475841 ttagattgagtagtaccaccattgttattatagtctatccacactatattt--ttcacatcatctccaaccttaacaac 36475917  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 5276459 - 5276505
Alignment:
Q  270 aagagaggtgacatttaacttgagaaagaagacttctttcccaccat 316  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  5276459 aagagaggtggcatttaacttgggaaaggagacttctttcccaccat 5276505  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 28104999 - 28105061
Alignment:
Q  191 gattctatgaacaaactgataaaattcaagtctcaaatgtagggattctaataattttgaata 253  Q
    ||||||||| || ||| ||||||||  || |||||| |||||||||||||||||||| |||||    
T  28104999 gattctatggacgaaccgataaaatcaaaatctcaagtgtagggattctaataatttagaata 28105061  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 17227938 - 17227884
Alignment:
Q  335 accattagattgagtagtaccaccattgttattatagtctatccacattatattt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17227938 accattagattgagtagtaccaccattgttattatagtctatccacactatattt 17227884  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 24094287 - 24094336
Alignment:
Q  204 aactgataaaattcaagtctcaaatgtagggattctaataattttgaata 253  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||| |||||    
T  24094287 aactgataaaatctaagtctcaagtgtagggattctaattatttagaata 24094336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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